Lep-MAP is a novel linkage map construction software.
Note there is a new version, Lep-MAP2 available in https://sourceforge.net/projects/lepmap2/
Also note a bug in Lep-MAP: genotype alleles should be given in numerical order like "1 2", not as "2 1".
If you use Lep-MAP, please cite
Lep-MAP: fast and accurate linkage map construction for large SNP datasets
Pasi Rastas; Lars Paulin; Ilkka Hanski; Rainer Lehtonen; Petri Auvinen
Bioinformatics 2013; doi: 10.1093/bioinformatics/btt563
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