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Name Modified Size InfoDownloads / Week
kraken-1.0-20150227.war 2015-02-27 472.4 MB
0
kraken-0.6-20141114.war 2014-11-17 472.1 MB
0
kraken-0.5-20141020.war 2014-10-20 64.9 kB
0
kraken-0.3-20141013.war 2014-10-13 472.0 MB
0
kraken-0.3-20140910.war 2014-09-10 309.5 MB
0
kraken-0.25-20140630.war 2014-07-01 306.2 MB
0
README 2013-12-03 1.4 kB
0
Totals: 7 Items   2.0 GB 0 
Current requirements:
---------------------
OSX - 10.8 or higher
Java 7 (http://www.java.com/en/download/faq/java_mac.xml)
Kraken annotation files - ftp://ftp.ebi.ac.uk/pub/contrib/enrightlab/kraken/annotation


Start Instructions
----------------
Download the current war file from: https://sourceforge.net/projects/krakenview/files/?source=navbar
start webserver by typing the following into a terminal:

java -jar kraken<version-data>.war --annotation <path to your uncompressed annotation directory>

This should start the webserver and open the startup page in a web browser.
use the --help option to see all available options.


Building R for use with this software on OSX
---------------------------------------------

Use the homebrew project to compile fortran and gcc (version 4.9 was used here).

brew fortran
brew gcc4.9

Download the R source and uncompress and untar it, cd to that directory.

mkdir build
cd build
../configure --prefix=/Users/maq/source/r-osx-build/clean-build/ --enable-R-framework=no --with-system-xz=no --disable-shared --enable-R-static-lib --enable-static=yes --with-tcltk=no --enable-BLAS-shlib=no CC=gcc-4.9make
make install

download RColorBrewer, R.methodsS3, R.oo and R.utils packages and install them using R CMD INSTALL.
Use the bioCLite script to install GenomicRanges, gplots, IRanges and ShortRead within R
Source: README, updated 2013-12-03