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README.txt 2015-08-27 669 Bytes
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fig_s6_1.txt 2013-07-16 162 Bytes
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fig_s6_2.txt 2013-07-16 205 Bytes
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fig_s6_3.txt 2013-07-16 197 Bytes
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A simple analysis for multiple samples is now supported.
The TrAp program can now be used to generate consensus trees out of multiple samples. 

The three files in this example correspond to inputs to figure S6 in the TrAp paper where:
fig_s6_1.txt represents the (contaminated) normal sample
fig_s6_2.txt represents the tumor sample before treatment
fig_s6_3.txt represents the tumor sample after treatment
 

In order to generate consensus trees, run TrAp (version 0.32 and higher) as follows from the command line:

java -jar TrApWithDependencies.jar --multisample fig_s6_{1..3}.txt

the result will be stored on the folder combined/ and can be opened with a browser
Source: README.txt, updated 2015-08-27