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multisample 2015-08-27
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README.txt 2012-09-27 1.5 kB
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figure2.txt 2012-09-26 158 Bytes
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figure1.txt 2012-09-26 159 Bytes
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TrAp (Tree Approach to clonality)

Input files for the deconvolution problem can be specified using the following syntax.
For examples see the figure1.txt and figure2.txt files.

DATA : defines the type of data to be used
DATA DATATYPE [DEFAULT_TOLERANCE]
        DATATYPE [ MEASURE | GAUSSIAN | FIXED ]  : How errors are defined
        DEFAULT_TOLERANCE : The default tolerance to be used. The value should be in range [0.0 : 1.0]

DATATYPE : How errors are defined
DATATYPE DATATYPE
        DATATYPE [ MEASURE | GAUSSIAN | FIXED ]  : How errors are defined

DEFAULT_TOLERANCE : The default tolerance to be used
DEFAULT_TOLERANCE [DEFAULT_TOLERANCE]
        DEFAULT_TOLERANCE : The default tolerance to be used. The value should be in range [0.0 : 1.0]

GENERALIZED : Specifies whether the generalized version of the TrAp should be used
GENERALIZED [GENERALIZED]
        GENERALIZED : Specifies whether the generalized version of the TrAp should be used

MAX_NUMBER : The maximum amount of solutions to be shown
MAX_NUMBER [MAX_NUMBER]
        MAX_NUMBER : The maximum amount of solutions to be shown. The value should be in range [1 : 2147483647]

MAX_PERCENT : The maximum percentage of solutions to be shown
MAX_PERCENT [MAX_PERCENT]
        MAX_PERCENT : The maximum percentage of solutions to be shown. The value should be in range [0.0 : 1.0]

SIGNAL : Input of a signal
SIGNAL name value [error]
        name : a descriptor
        value : the value
        error : the error
Source: README.txt, updated 2012-09-27