KAnalyze Files

DNA/RNA Sequence K-mer Toolkit

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Name	Modified	Size	InfoDownloads / Week
Parent folder
kanalyze-src-0.9.4.tar.gz	2014-03-07	7.7 MB	0
kanalyze-0.9.4-win.zip	2014-03-07	717.6 kB	0
kanalyze-0.9.4-linux.tar.gz	2014-03-07	691.5 kB	0
Totals: 3 Items		9.2 MB	0

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FSA
FSA is a probabilistic multiple sequence alignment algorithm which uses a "distance-based" approach to aligning homologous protein, RNA or DNA sequences.
kSNP
kSNP4 identifies the pan-genome SNPs in a set of genome sequences, and estimates phylogenetic trees based upon those SNPs. SNP discovery is based on k-mer analysis, and requires no multiple sequence alignment or the selection of a reference genome, so kSNP4 can take 100's of microbial genomes as...
GapFiller
GapFiller is a seed-and-extend local assembler to fill the gap within paired reads. It can be used for both DNA and RNA and it has been tested on Illumina data. GapFiller can be used whenever a sequence is to be assembled starting from reads lying on its ends, provided a loose estimate of...
miRge3
An update to Python package to perform comprehensive analysis of small RNA sequencing data, including miRNA annotation, A-to-I editing, novel miRNA detection, isomiR analysis, visualization through IGV, processing Unique Molecular Identifieres (UMI), tRF detection and producing interactive...
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ESTScan is a program that can detect coding regions in DNA/RNA sequences, even if they are of low quality (e.g. EST sequences). ESTScan will also detect and correct sequencing errors that lead to frameshifts.

KAnalyze Files

DNA/RNA Sequence K-mer Toolkit

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