AtomicJ Files

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*  JROBUST Version 1.2 *
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15 June 2013

(C) Copyright 2013 by Pawel Hermanowicz.


JRobust is an application for analysis of Atomic Force Microscopy data, in particular extracting mechanical properties from force curves and analysis of AFM images.

JRobust is licensed under the terms of the GNU General Public License (GPL).  A copy of the license is included in the distribution.

Please note that JRobust  is distributed WITHOUT ANY WARRANTY;
without even the implied warranty of MERCHANTABILITY or FITNESS FOR A
PARTICULAR PURPOSE.  Please refer to the license for details.

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DEPENDENCIES
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JRobust  has the following dependencies:

(a)  Java Runtime Environment (JRE) 1.7 or higher. JRobust is available for download bundled with JRE 1.7 update 13,  wrapped as a MS Windows executable. If you run the executable jar file, you must install JRE, which can be downloaded from the Oracle website (http://www.oracle.com/technetwork/java/javase/downloads/jre7-downloads-1880261.html)

JRE is owned by Oracle and is distributed under the Oracle Binary Code License Agreement (http://www.oracle.com/technetwork/java/javase/terms/license/index.html). 

.
(b) JFreeChart 1.0.14 or higher. The copyright to the JFreeChart library is held by Object Refinery Limited and other contributors and it is maintained by David Gilbert (http://www.jfree.org/). JFreeChart is licensed under the terms of the GNU Lesser General Public Licence (LGPL). The complete source code can be found at

http://www.jfree.org/jfreechart/api/javadoc/index.html

(c) JCommon - version 1.0.0 or later.  The jar file (version 1.0.17) is included in the JRobust distribution.  The complete source code for JCommon is available at:

    http://www.jfree.org/jcommon/

JCommon is licensed under the terms of the GNU Lesser General Public License.

(d)  FreeHEP Vector Graphics 2.1.1 or later.  The necessary jar files (version. 2.1.1.)
are included in the JRobust distribution.  You can obtain the complete
source code for FreeHEp Vector graphics from:

http://java.freehep.org/vectorgraphics/index.html/

FreeHEP Vector Graphics 2.1.1 is licensed under the terms of the GNU Lesser General Public License.

(e)  Apache Commons Sanselan 0.97 or higher, available under the  ASF (Apache) License. The license can be found at http://www.apache.org/licenses/LICENSE-2.0. Sanselan is a library for reading and writing various image formats. The necessary jar file is included in the JRobust distribution. Complete source code of Sanselan can be found at

http://commons.apache.org/imaging/

(f) JAMA version 1.0.2 or higher, a public domain java matrix manipulation library. The necessary jar file is included in this distribution of JRobust. The complete source code and list of authors can be found at  

lihttp://math.nist.gov/javanumerics/jama/.

(g) Commons Math - The Apache Commons  Mathematics Library, version 2.2 (not higher, due to changes in their API) The library is licensed under  Apache License, Version 2.0, with additional terms specified at the main project website ( The license itself can be found at http://www.apache.org/licenses/LICENSE-2.0).
The source code of Commons Math can be accessed through the main webpage of the project:

http://commons.apache.org/math/userguide/overview.html

(h) savitzky-golay-filter, implementation of Savitzky-Golay filter in Java, licensed under the Apache License 2.0. The source code and information about the author can be found at http://code.google.com/p/savitzky-golay-filter/


(i) iText 2.1.5, a library for creating PDF documents. iText 2.1.5 (iText is a registered Trademark of 1T3XT BVBA.) is licensed under the terms of the GNU Lesser General Public Licence and is available to download from:

    http://www.lowagie.com/iText/


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SUPPORT
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If you have any questions , bug reports or request regarding new features that should be added to JRobust, please write to

pawel.hermanowicz@uj.edu.pl

Request to include support for new AFM data format files are especially welcome, just as are request to include new methods for contact point estimation.