Just_Annotate_My_Genome Files

Comprehensively annotate your non-model species genome.

Status: Beta

Brought to you by: alpapan

The interactive file manager requires Javascript. Please enable it or use sftp or scp.
You may still browse the files here.

Name	Modified	Size	InfoDownloads / Week
RC	2014-12-19		0
databases	2014-01-10		0
tutorial	2013-12-26		2
README	2014-01-09	626 Bytes	0
Totals: 4 Items		626 Bytes	2

Read INSTALL before continuing

Full documentation and tutorials are available from
http://jamg.sourceforge.net

See LICENSE for the license

=============================================================================================================
Known bugs
* Please note that exonerate is not free of bugs but this software tries to deal with some of them.


Please report bugs to:

 Alexie Papanicolaou

        1 CSIRO Ecosystem Sciences, GPO 1700, Canberra 2601, Australia
        alexie@butterflybase.org

=============================================================================================================

Source: README, updated 2014-01-09

Other Useful Business Software

MongoDB Atlas runs apps anywhere

Deploy in 115+ regions with the modern database for every enterprise.

MongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.

Start Free

Photo and Video Editing APIs and SDKs

Trusted by 150 million+ creators and businesses globally

Unlock Picsart's full editing suite by embedding our Editor SDK directly into your platform. Offer your users the power of a full design suite without leaving your site.

Learn More

Recommended Projects

EvidentialGene
EvidentialGene is a genome informatics project, "Evidence Directed Gene Construction for Eukaryotes", to construct high quality, accurate gene sets for animals and plants, developed by Don Gilbert at Indiana University, see http://arthropods.eugenes.org/EvidentialGene/ Construction refers...
SnowyOwl
SnowyOwl is a gene prediction pipeline that uses RNA-Seq data to train and provide hints for the generation of Hidden Markov Model (HMM)-based gene predictions, and to evaluate the resulting models. The pipeline has been validated and streamlined by comparing its predictions to manually curated...
Prokka
Prokka is a command-line software tool for rapid annotation of prokaryotic genomes (bacteria and archaea). Given a FASTA file of contigs, it predicts genes, rRNAs, tRNAs, and other functional elements, then assigns functions by comparing to reference protein databases and HMM profiles. It...
Altrans
Altrans is a method for the relative quantification of splicing events. It requires a BAM alignment file from an RNA-seq experiment and an annotation file in GTF format detailing the location of the exons in the genome. It uses paired end reads where one mate maps to one exon and the other mate...
PanOCT
PanOCT, Pan-genome Ortholog Clustering Tool, is a program written in PERL for pan-genomic analysis of closely related prokaryotic species or strains. Unlike traditional graph-based ortholog detection programs, it uses micro synteny or conserved gene neighborhood (CGN) in addition to homology to...

Just_Annotate_My_Genome Files

Comprehensively annotate your non-model species genome.

Get an email when there's a new version of Just_Annotate_My_Genome