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Benchmark.zip (704.0 MB)
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| Name | Modified | Size | Downloads / Week |
|---|---|---|---|
| Parent folder | |||
| Benchmark.zip | 2017-05-04 | 704.0 MB | |
| README.txt | 2016-04-01 | 1.4 kB | |
| OralSearchResults.tgz | 2016-04-01 | 62.8 MB | |
| Saliva.faa.tgz | 2016-04-01 | 312.5 MB | |
| OralGroundTruth.tgz | 2016-04-01 | 20.0 MB | |
| RESFAMResults.tgz | 2016-03-28 | 16.2 kB | |
| SimMarineGroundTruth.tgz | 2016-03-28 | 7.1 MB | |
| OralAbundanceCorrelation.tgz | 2016-03-28 | 4.8 kB | |
| OralDEResults.tgz | 2016-03-28 | 22.0 kB | |
| OralTargetedAssembly.tgz | 2016-03-28 | 513.3 kB | |
| SalivaAssembledContigs.tgz | 2016-03-28 | 13.1 MB | |
| Totals: 11 Items | 1.1 GB | 0 | |
This folder aims at providing test data sets and intermediate results that were not presented in the original paper. *SimMarine_23G.fa.tgz: The simulated marine data set, in FASTA format *SimMarineGroundTruth.tgz: The ground-truth homolog reads used in the benchmark experiment on the simulated marine data set *Saliva.faa.tgz: The FragGeneScan called short peptides for the real human saliva data set (SRS013942), in FASTA format *SalivaAssembledContigs.tgz: The targeted assembly results on the real human saliva data set (SRS013942) *RESFAMResults.tgz: The RPKM of each anti-microbial resistance gene families as predicted by HMM-GRASPx and HMMER3 among 12 human microbiome project data sets (6 supragingival and 6 stool) *OralSearchResults.tgz: The search results generated by HMM-GRASPx and HMMER3 *OralGroundTruth.tgz: The ground-truth definition for the 14 high-abundance genomes in the human oral data sets *OralAbundanceCorrelation.tgz: The abundances (as computed in raw read count) predicted by BWA (ground-truth), HMM-GRASPx, and HMMER3 among 8 metatranscriptomic data sets (SRP049210) *OralDEResults.tgz: The differentially expressed protein families predicted by DESeq2 on the 8 metatranscriptomic data sets (SRP049210) *OralTargetedAssembly.tgz: The contigs generated by targeted assembly on reads recruited by HMM-GRASPx and HMMER3 from 8 metatranscriptomic data sets (SRP049210)