Home / Test_Data / ref.bowtie2
Name Modified Size InfoDownloads / Week
Parent folder
ref.rev.2.bt2 2014-07-25 250.0 kB
0
ref.rev.1.bt2 2014-07-25 4.5 MB
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ref.fa 2014-07-25 1.0 MB
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ref.4.bt2 2014-07-25 250.0 kB
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ref.3.bt2 2014-07-25 17 Bytes
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ref.2.bt2 2014-07-25 250.0 kB
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ref.1.bt2 2014-07-25 4.5 MB
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Totals: 7 Items   10.8 MB 0 
This folder contains reads, reference sequence along with demo output for testing.
1. fastQ files for read1 and read2
   The hairpin-bisulfite-seq data (r1.fq and r2.fq) are generated for mESC (Zhao et al., Genome Res, 2014).
2. indexed reference
   The reference (ref.fa) is 1M region of mouse genome (chr19 12000000-13000000). The reference has been
   indexed using bowtie1 (ref.bowtie1) and bowtie2 (ref.bowtie2) respectively.
3. demo output
   Two folders with demo outputs using bowtie1 (out.bowtie1) or bowtie2 (out.bowtie2) can be found.
Source: readme.txt, updated 2014-07-25