Home / Test_Data
Name Modified Size InfoDownloads / Week
Parent folder
ref.bowtie2 2014-07-25
0
ref.bowtie1 2014-07-25
0
out.bowtie2 2014-07-25
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out.bowtie1 2014-07-25
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ref.fa 2014-07-25 1.0 MB
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readme.txt 2014-07-25 554 Bytes
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r2.fq 2014-07-25 5.3 MB
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r1.fq 2014-07-25 5.3 MB
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Totals: 8 Items   11.5 MB 0 
This folder contains reads, reference sequence along with demo output for testing.
1. fastQ files for read1 and read2
   The hairpin-bisulfite-seq data (r1.fq and r2.fq) are generated for mESC (Zhao et al., Genome Res, 2014).
2. indexed reference
   The reference (ref.fa) is 1M region of mouse genome (chr19 12000000-13000000). The reference has been
   indexed using bowtie1 (ref.bowtie1) and bowtie2 (ref.bowtie2) respectively.
3. demo output
   Two folders with demo outputs using bowtie1 (out.bowtie1) or bowtie2 (out.bowtie2) can be found.
Source: readme.txt, updated 2014-07-25