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| Name | Modified | Size | Downloads / Week |
|---|---|---|---|
| Parent folder | |||
| new_haplotype.txt | 2014-11-18 | 160 Bytes | |
| README.txt | 2014-11-18 | 569 Bytes | |
| reads.txt | 2014-11-18 | 2.4 kB | |
| Totals: 3 Items | 3.1 kB | 0 | |
In the input file "reads.txt" 5 is number of individuals. 15 is number of sites. S 0 to S 4 are the 5 individuals. The data is in the form of site allele and error rate. The output file "new_haplotype.txt" is the haplotype matrix, with the 1st and 2nd line belonging to S 0, etc. The binary files are self-explanatory with GLPK and CPLEX the solver name and Mac for Mac and 32 and 64 the Linux systems. A typical command line is: ./HapReads reads.txt 10 where 10 is the blockSize.You can also gives the output file name by: ./HapReads reads.txt 10 my_own_output_file