This code is a homology-aware phylogenomics tool for rapidly parsing whole genome sequences and building sets of small multiple sequence alignments for tree construction. The code relies on a new implementation of suffix arrays to store and retrieve orthologous k-mers across several genomes. Resulting k-mer blocks can then be combined into one or more supermatrices for further phylogenetic analysis.
Follow hakmer
Other Useful Business Software
Our Free Plans just got better! | Auth0
You asked, we delivered! Auth0 is excited to expand our Free and Paid plans to include more options so you can focus on building, deploying, and scaling applications without having to worry about your security. Auth0 now, thank yourself later.
Rate This Project
Login To Rate This Project
User Reviews
Be the first to post a review of hakmer!