This code is a homology-aware phylogenomics tool for rapidly parsing whole genome sequences and building sets of small multiple sequence alignments for tree construction. The code relies on a new implementation of suffix arrays to store and retrieve orthologous k-mers across several genomes. Resulting k-mer blocks can then be combined into one or more supermatrices for further phylogenetic analysis.
Follow hakmer
Other Useful Business Software
Gemini 3 and 200+ AI Models on One Platform
Build, govern, and optimize agents and models with Gemini Enterprise Agent Platform.
Rate This Project
Login To Rate This Project
User Reviews
Be the first to post a review of hakmer!