GAAS download | SourceForge.net

GAAS (Genome relative Abundance and Average Size) is a bioinformatic tool to calculate accurate community composition and average genome size in metagenomes by using BLAST, advanced parsing of hits and correction of genome length bias.

Features

FASTA as input, graphs as output
Normalization by genome length
Weighting of similarities
Statistical intervals of confidence

Project Samples

Convergence of the bootstrapped estimates

Project Activity

See All Activity >

License

GNU General Public License version 2.0 (GPLv2)

Follow GAAS

GAAS Web Site

Other Useful Business Software

Earn up to 16% annual interest with Nexo.

Let your crypto work for you

Put idle assets to work with competitive interest rates, borrow without selling, and trade with precision. All in one platform. Geographic restrictions, eligibility, and terms apply.

Get started with Nexo.

Rate This Project

User Reviews

Be the first to post a review of GAAS!

Additional Project Details

Intended Audience

Science/Research

User Interface

Console/Terminal

Programming Language

Perl

Related Categories

Perl Bio-Informatics Software

Registered

2008-11-03

Similar Business Software

OmicsBox

OmicsBox is a leading bioinformatics solution that offers end-to-end data analysis of genomes, transcriptomes, metagenomes, and genetic variation studies. The application is used by top private and public research institutions worldwide and allows researchers to easily process large and complex...

See Software
OmnibusX

In the world of biological data science, navigating vast and complex datasets can be a daunting task. Our software toolkit is designed to empower you by accelerating analysis, promoting accessibility, and providing comprehensive visualization tools to help you make sense of these intricate...

See Software
Geneious

Geneious Prime makes bioinformatics accessible by transforming raw data into visualizations that make sequence analysis intuitive and user-friendly. Simple sequence assembly and easy editing of contigs. Automatic annotation for gene prediction, motifs, translation, and variant calling. Genotype...

See Software
GenomeBrowse

This free tool delivers stunning visualizations of your genomic data that give you the power to see what is occurring at each base pair in your samples. GenomeBrowse runs as a native desktop application on your computer. No longer do you have to sacrifice speed and interface quality to obtain a...

See Software
Illumina DRAGEN Secondary Analysis

The Illumina DRAGEN Secondary Analysis provides accurate, comprehensive, and efficient analysis of next-generation sequencing data. Graph reference genome and machine learning driving unprecedented accuracy. Provides ultra-efficient workflow; can fully process a 34x whole human genome in ~30...

See Software
Genome Analysis Toolkit (GATK)

Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. The GATK...

See Software