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This package includes a few programs for rapid functional annotation for metagenomic sequences, including,
1) Gene prediction by FragGeneScan;
2) Similarity search by RAPSearch2;
3) Functional annotation in GO (Gene Ontology) and EC (Enzyme Commission) based on similarity search results;
4) From EC to metabolic pathway reconstruction by MinPath.
Inputs: Just sequencing reads (or assemblies)
Outputs: Protein-coding genes (or gene fragments); similarity search; functional annotations (in GO and EC); metabolic pathways.
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AlgorithmsLicense
GNU General Public License version 3.0 (GPLv3)Follow Fun4Me
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User Reviews
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I downloaded the software and ran it with python3. I received a series of syntax errors. I spent 20 minutes troubleshooting but nothing. The provided script doesn't work as it is, I recommend checking it better and uploading a working version. It's a pity since the idea is interesting and I was hoping to use one of the packages.