Ferrite.jl Files

Ferrite v1.0.0

Diff since v0.3.14

See CHANGELOG.md for notable changes.

Merged pull requests: - SubDofHandler/MixedGrid/PorousMedia example (#448) (@KnutAM) - FaceCache and FaceIterator (#495) (@KnutAM) - Describe Navier-Stokes Diffeq example mesh by gmsh api usage and translate via FerriteGmsh (#498) (@koehlerson) - Extract boundary entities + getfaceedges helper (#606) (@AbdAlazezAhmed) - Pyramids (#623) (@lijas) - Improve dof distribution interface (#627) (@termi-official) - Helper script for convergence rates for Poisson problems (#640) (@termi-official) - [BREAKING] Embedded elements (#651) (@termi-official) - Refactor to use grid and dofhandler interface internally (#655) (@termi-official) - get_*_coordinates[!] - consistent naming (#664) (@KnutAM) - Remove unused typeparameter from MixedDofHandler (#666) (@kimauth) - Merge DofHandler and MixedDofHandler (#667) (@kimauth) - Generalize topology construction (#670) (@termi-official) - Replace deprecated functions in tests/examples (#671) (@KnutAM) - Rework code for add!(::ConstraintHandler, ::Dirichlet) (#672) (@fredrikekre) - Add ndofs_per_cell(::FieldHandler) (#673) (@fredrikekre) - Speed up transform!(grid, f) (#675) (@KnutAM) - Rework the AbstractCell interface (#679) (@fredrikekre) - Remove old vertexdof_indices method (#685) (@fredrikekre) - document vtk_grid(::String, ::DofHandler) (#687) (@KnutAM) - Document all the reference shapes and their (current) numbering (#688) (@fredrikekre) - Abstraction layer around vtk export (#692) (@KnutAM) - CI timeout (#693) (@KnutAM) - Implement (Scalar|Vector)Interpolation and VectorizedInterpolation{<:ScalarInterpolation} (#694) (@fredrikekre) - Default to Lagrange{refdim,refshape,1}() for geometric mapping (#695) (@fredrikekre) - Remove deprecated L2Projector methods (#697) (@fredrikekre) - Deprecate function_*(::VectorValues, ::Int, ::VectorDofs) (#698) (@fredrikekre) - Remove project_to_nodes option in L2 projection (#699) (@fredrikekre) - Deprecate compute_vertex_values (#700) (@fredrikekre) - Update VTK export to use CellValues for evalutation (#703) (@fredrikekre) - Fix point eval interface (#705) (@termi-official) - Improve boundschecks during assemble (#706) (@KnutAM) - Deprecate start_assemble(f, K) (#707) (@KnutAM) - Merge (Cell|Face)(Scalar|Vector)Values (#708) (@fredrikekre) - Cross-elements coupling for DiscontinuousLagrange sparsity patterns. (#710) (@AbdAlazezAhmed) - Use the new reference shapes for Interpolations and QuadratureRule (#711) (@fredrikekre) - Remove the refdim parameter from AbstractCell. (#712) (@fredrikekre) - replaced str with str_scalar/str_vector for CellValues warning (#713) (@JanM12) - Hex27 VTK export (#714) (@termi-official) - Embedded elements showcase: Gray-Scott model on a sphere (#715) (@termi-official) - QuadratureRule: remove dim parameter and introduce FaceQuadratureRule (#716) (@fredrikekre) - Allocate less in find_local_coordinate (#719) (@fredrikekre) - Deprecate Ferrite.value and Ferrite.derivative (#720) (@fredrikekre) - Fold Ferrite.value into methods of shape_value (#721) (@fredrikekre) - More doc versions (#723) (@termi-official) - Use the interpolation to figure out the return type in get_point_values (#724) (@fredrikekre) - Make create_incidence_matrix work for AbstractGrid (#726) (@lijas) - ConstraintHandler for discontinuous interpolations (#729) (@AbdAlazezAhmed) - CellIterator broadcast safety doc warning (#730) (@AbdAlazezAhmed) - introduced interpolation Lagrange{RefQuadrilateral, 3} (#731) (@fredrikekre) - Error if the interpolation dof indices are wrong (#732) (@termi-official) - Better defaults for high order dof distribution (#733) (@termi-official) - Enable usage of vectorized geometric mapping also in non-embedded case (#734) (@fredrikekre) - New DofHandler syntax for mixed grids / subdomains (#735) (@kimauth) - pretty printing for VectorizedInterpolation (#736) (@kimauth) - Structure the documentation according to the Diataxis framework. (#737) (@fredrikekre) - Add stress computation to incompressible elasticity example (#739) (@gagankaushikmanyam) - InterfaceValues for DG interface integration (#743) (@AbdAlazezAhmed) - InterfaceCache & InterfaceIterator (#747) (@AbdAlazezAhmed) - Fix doc links (#748) (@termi-official) - Add tolerance for periodic face search. (#749) (@lijas) - Make benchmarks work with master branch (#751) (@AbdAlazezAhmed) - Topology vroom 1 (#753) (@termi-official) - enhancement: Remove exported names (#754) (@3RB16) - Update interpolation docs (#755) (@termi-official) - Restructure tutorials into tutorials/howto/gallery (#756) (@fredrikekre) - getcoordinates (#757) (@KnutAM) - Fix neighborhood queries for topology (#758) (@termi-official) - FaceSkeleton Vroom 1 (#759) (@AbdAlazezAhmed) - Split values into geometric mapping and function values (#764) (@KnutAM) - Add changelog entries for the upcoming release (#765) (@fredrikekre) - Various changes to FaceCache/InterfaceCache/InterfaceIterator (#769) (@fredrikekre) - Fix show of Face and Cell values (#771) (@KnutAM) - Implement FaceQuadratureRule for RefPrism and RefPyramid (#779) (@AbdAlazezAhmed) - enable dependabot for GitHub actions (#782) (@ranocha) - Bump actions/checkout from 2 to 3 (#783) (@dependabot[bot]) - Bump codecov/codecov-action from 1 to 3 (#784) (@dependabot[bot]) - Change type of PointIterator in PointEvalHandler.jl (#785) (@suurj) - use replace! instead of aliased map! (#786) (@KnutAM) - DG heat equation tutorial (#787) (@AbdAlazezAhmed) - Fix some Documenter link warnings (#791) (@fredrikekre) - Improvements to assembler (#792) (@lijas) - DocumenterCitations.jl baseline integration (#793) (@termi-official) - Fix CellIterator for subdomains (#794) (@kimauth) - Add more references and some urls/dois (#795) (@fredrikekre) - Add Cenanovic citation (#796) (@termi-official) - Linear elasticity example (#799) (@kimauth) - fix vtk export of fields on mixed grids (#800) (@kimauth) - More flexibility for internal types (#802) (@termi-official) - remove allocations in reinit!(cv, xe) (#803) (@kimauth) - pretty print interpolation in SubDofHandler (#804) (@kimauth) - Bump actions/checkout from 3 to 4 (#805) (@dependabot[bot]) - define 1-arg getcelltype with a subdofhandler (#807) (@KnutAM) - Fix CI times (#810) (@termi-official) - Uniform point sampling for reference geometry and interpolation test fix (#818) (@termi-official) - Batch evaluations (#819) (@termi-official) - Test coverage for PointEval with nonlinear geometries (#820) (@termi-official) - Add docstring to SubDofHandler (#825) (@KnutAM) - Extensible InterpolationInfo (#830) (@termi-official) - Introduce OrderedSets (#834) (@termi-official) - add isequal and hash methods to check tuple in BoundaryIndex Sets without type piracy (#835) (@koehlerson) - More first-order CR type elements (#838) (@termi-official) - change to well posed NeoHooke (#846) (@koehlerson) - Support saving no, or first order, derivatives in FEValues (#847) (@KnutAM) - Some docfixes (#851) (@KnutAM) - Rename files with values to match type name (#854) (@KnutAM) - Update benchmarks (#855) (@AbdAlazezAhmed) - Update CHANGELOG.md for DG PRs (#856) (@AbdAlazezAhmed) - Simplify initialization of types for N, dNdx, and dNdξ (#858) (@fredrikekre) - Make close of ConstraintHandler 50x faster (#860) (@KnutAM) - Minor adjustments to FEValues devdocs (#861) (@KnutAM) - Fix typos discovered by typos ci (#866) (@KnutAM) - Add list of registered packages in the Ferrite ecosystem (#869) (@KnutAM) - Fix bug in L2Projector (#870) (@lijas) - Fix wrong confusing order of argument names in shape_x functions (#871) (@KnutAM) - Bump actions/cache from 3 to 4 (#878) (@dependabot[bot]) - Bump codecov/codecov-action from 3 to 4 (#879) (@dependabot[bot]) - Add helper function bounding_box (#880) (@lijas) - Use julia-actions/cache instead of actions/cache. (#881) (@fredrikekre) - Make default constructor type stable (#882) (@KnutAM) - doc: fix some doc build warnings (#887) (@fredrikekre) - Implement a proper sparsity pattern (#888) (@fredrikekre) - Update some missing Lagrange docs (#889) (@termi-official) - [X-PR] p4est/p8est face transformation fix (#890) (@termi-official) - Bump julia-actions/setup-julia from 1 to 2 (#895) (@dependabot[bot]) - p4est constraint handler integration (#900) (@termi-official) - [X-PR] p4est edge operations and consistent corner operation (#902) (@koehlerson) - Fix logo generation. (#904) (@KnutAM) - Explicitly import all names (#905) (@fredrikekre) - Update constraints.md (#907) (@koehlerson) - Only test l2-projection hash for vtk export on linux (#915) (@KnutAM) - Generalize CSC assembler (#916) (@termi-official) - [X-PR] Update OrdinaryDiffEq.jl and fix Navier-Stokes solver (#917) (@termi-official) - Delete unused method: n_facets_per_cell (#921) (@KnutAM) - Deprecate onboundary, remove boundary_matrix property from Grid (#924) (@fredrikekre) - Shell on solid-face test (#926) (@lijas) - Add pre-commit action workflow (#928) (@fredrikekre) - Remove workaround for facets in porous media example (#929) (@KnutAM) - Remove facet workarounds for FerriteGmsh (#932) (@KnutAM) - grid.jl docstrings and remove qualified Ferrite names (#933) (@KnutAM) - Add make clean target to docs/Makefile (#934) (@fredrikekre) - Document reference shape entity naming (#935) (@KnutAM) - Fix pr link in vtk_grid error message (#937) (@KnutAM) - Higher order gradients in CellValues (#938) (@lijas) - Changelog for facets (#940) (@KnutAM) - add dispatch for 2D edgeidx topology (#942) (@koehlerson) - replace getdim with getrefdim/getspatialdim and getfielddim by n_components (#943) (@KnutAM) - Simplify and speedup shape_gradient_and_value for embedded (#947) (@KnutAM) - Fix and test write_cellset (#948) (@KnutAM) - L2Projector on mixed grids (#949) (@KnutAM) - remove JuaFEM mention from README (#951) (@KristofferC) - Remove "simple finite element toolbox" from README file (#952) (@lijas) - Rename default_interpolation -> geometric_interpolation (#953) (@KnutAM) - Run ExplicitImport.jl's checks on CI (#954) (@fredrikekre) - Changelog entry for geometric_interpolation (#955) (@KnutAM) - Fix apply_analytical for subdomains (#956) (@DRollin) - Function barrier in pointeval test (#957) (@KnutAM) - Warn about SArray output from embedded FEValues (#959) (@KnutAM) - use concrete types in MaterialState in topology example (#961) (@KristofferC) - Rename reference and references (#962) (@termi-official) - cache neighborhood information in topology example (#963) (@KristofferC) - Expose some missing docstrings to devdocs (#964) (@termi-official) - Fix crash with dof handler on true subdomains (#967) (@termi-official) - Bump julia-actions/cache from 1 to 2 (#970) (@dependabot[bot]) - fix type error in grid generators and add some test functions for gri… (#973) (@Abdelrahman912) - ExclusiveTopology with ArrayOfVectorViews backend (#974) (@KnutAM) - Type-stable construction of AbstractValues (#979) (@KnutAM) - Allow geometric_interpolation(::AbstractCell) (#981) (@KnutAM) - Update to BlockArrays.jl v1 (#982) (@KnutAM) - Remove self-qualified names (#985) (@fredrikekre) - Fix nfacets for non-Grids (#987) (@termi-official) - Update Documenter and other doc dependencies. (#990) (@fredrikekre) - Extend quadrature type to include a storage type parameter (#991) (@termi-official) - Allow more vector types for nodal evaluation of solution. (#992) (@termi-official) - Require Julia 1.9 and remove ScalarWrapper (#994) (@fredrikekre) - Run ExplicitImports check on extension modules (#995) (@fredrikekre) - Change all deprecations to hard errors. (#996) (@fredrikekre) - Replace shape_value etc for interpolations with reference_shape_value (#997) (@fredrikekre) - Only facetskeleton in ExclusiveTopology (#998) (@KnutAM) - Flip the sign in the definition of jump for interface values (#999) (@KnutAM) - Set version to 1.0.0. (#1000) (@fredrikekre) - Fix deprecation warning of Ferrite.(vertices|faces|edges) (#1003) (@fredrikekre) - Add init_sparsity_pattern docstring to docs (#1005) (@KnutAM) - Fix Quadrature rule docs and syms (#1007) (@termi-official) - Fix arg ordering in add docstring (#1008) (@KnutAM) - Throw when asking for dof indices of vectorized interpolations (#1010) (@KnutAM) - remove ApplyStrategy enums (#1013) (@KnutAM) - Rename VTKFile to VTKGridFile (#1014) (@KnutAM) - Remove VTKFileCollection (#1015) (@KnutAM) - Fix typed functions in Dirichlet (#1016) (@KnutAM) - Widen accepted vector types in FEValues (#1017) (@termi-official) - Add direct computation of mapping values (#1018) (@termi-official) - Update degrees of freedom topic to reflect updates for 1.0 (#1020) (@KnutAM) - speed up adding sparsity pattern entries with coupling (#1028) (@KristofferC) - reduce chunk size of Hessian in Landau example to improve latency and performance (#1032) (@KristofferC) - Add updated function names in devdocs (#1036) (@KnutAM) - Fix notebook links in tutorials (#1038) (@KnutAM) - Fix doc warnings and make docs build strict (#1039) (@KnutAM) - Fix ns_vs_diffeq tutorial (#1045) (@KnutAM) - Use https for codecov links (#1048) (@fredrikekre) - Fix a typo in plasticity example (#1052) (@Niel-77) - Fix wrong function to save pvd files in examples and docs (#1055) (@KnutAM) - Clean up doc remaints of old face definition (#1056) (@KnutAM) - Fix a deprecation warning in hyperelasticity tutorial (#1057) (@fredrikekre) - Extend COOAssembler to also handle vector assembly (#1058) (@fredrikekre) - Deprecate assemble! with local vector before local matrix (#1059) (@fredrikekre) - User Changelog.jl for changelog generation (#1061) (@fredrikekre) - Update doc build dependencies. (#1062) (@fredrikekre) - Replace sparse with spzeros! in grid coloring (#1064) (@fredrikekre) - Clarify why the inverse Metis permutation is used, closes [#1065] (#1066) (@fredrikekre) - Modernize the threaded assembly howto (#1068) (@fredrikekre) - Consistently return the vtk file in export methods (#1069) (@fredrikekre) - Remove old example notebook, closes [#91]. (#1073) (@fredrikekre) - Correcting weak form + spelling mistake (#1074) (@mipals) - Miscellaneous fixes to documentation (#1075) (@fredrikekre) - Update documentation dependencies. (#1076) (@fredrikekre) - Update changelog date for 1.0.0 (#1077) (@fredrikekre) - Remove explicit documention of fields in CellCache (#1079) (@KnutAM) - Add changelog for COOAssembler (#1080) (@KnutAM) - Deprecate celldofs!(::Vector, ::(Cell|Facet)Cache) (#1082) (@fredrikekre) - Add [compat] for ForwardDiff and StaticArrays (#1085) (@fredrikekre)

Closed issues: - Make Yeoh large deformation notebook work again (#91) - Export of super parametric elements (#167) - Support arbitrary precision (#195) - CellIterator not broadcast safe (#267) - Maybe remove the fallback vtk_point_data (#278) - L2Projection does not work accurately for mixed grids (#330) - No examples with MixedDofHandler (#355) - project_to_nodes in L2Projector projects to vertices (#380) - Grid inconsistencies (#394) - Remove ScalarWrappers and use const fields instead (#488) - Requesting help with the error "det(J) is not positive" when using custom Delaunay grids (#515) - Threaded Assembly Performance Degradation (#526) - Support for Wedge&Pyramid elements (#580) - Extract boundary entities (#595) - Rename Ferrite.value and Ferrite.derivative (#609) - L2Projector for mixed grids (#610) - find_field and field_offset broken for MixedDofHandler (#613) - Field dim is not necessarily spatial dim (#616) - Topology construction is slow (#617) - Fix embedded elements (#619) - Introduce citation system to docs (#620) - Merging DofHandler and MixedDofHandler (#624) - Use OrderedSet for cellsets (#631) - Verify interpolation <-> cell compatibility (#638) - Topology broken for wedges (#641) - dof management dev-docs (#661) - Interpolation parameterization (#676) - Change parameterization of (Abstract)Cell (#677) - (Face|Cell)(Scalar|Vector)Values -> (Face|Cell)Values (#682) - Workspace/additional data for interpolations in CellValues (#683) - Topology construction for 1D elements is broken (#684) - Update benchmarks for next release (#722) - ExclusiveTopology topology.cell_neighbor is inclusive. (#728) - Changing the meaning of Face in 1d/2d problems? (#740) - Naming convention for getters (#741) - Links in "Documentation of examples"-page do not work (#744) - Refactoring of examples into tutorials, how-to guides, and code gallery. (#745) - Remove exported names (#746) - Showing FaceValues in the REPL is broken (#752) - Update threading example (#760) - Bug in PointValues (#763) - Poor performance of converting Gmsh grid to Ferrite grid (#770) - Implement FaceQuadratureRule for RefPrism and RefPyramid (#772) - Go to definition problems (#773) - A Loop over a CellIterator returns an Object of type CellCache (#775) - Solutions of the assembled systems are misaligned/corrupted (#777) - Ferrite.jl User & Developer Conference 2023 (#781) - Too tight tolerance for pyramid interpolation tests? (#811) - SimpleCellValues tutorial (#824) - Docstrings for addedgeset! and addvertexset! missing (#833) - AbstractFunctionValues (#837) - Hyperelasticity example is not polyconvex (#844) - Simplify deduction of eltype in FunctionValues constructor (#857) - How to avoid trivial solutions? (#885) - Explicitly import all names (#886) - Coupling shells to solid faces (#899) - Adopt proper names for entities with different dimensions and codimensions (#901) - Some of links in documentation are dead (#908) - Release v0.4 or wait to finish 1.0? (#909) - Don't promise to not change fields in Grid (#918) - Changelog for face -> facet changes (#919) - Document return values of embedded as experimental / may change (#922) - Document boundary entities (#923) - Use Changelog.jl for CHANGELOG and include it as part of the HTML documentation (#925) - getdim consistency (#936) - fix topology getneighborhood call in 2D (#941) - Docs naming for Reference vs References (#945) - default_interpolation -> geometric_interpolation ? (#950) - FacetValue does not seem to be type stable (#960) - CellIterator causes a OutOfMemoryError (#966) - Ferrite.jl User & Developer Conference 2024 (#969) - docstring of geometric_interpolation is wrong (#978) - Update to BlockArrays 1.0 (#980) - Error after importing vtu file to paraview (#986) - ExclusiveTopology skeletons (#988) - Quadrature rule storage type parameter (#989) - Use separate functions for creating quadrature rule instead of the QuadratureRule constructor (#1002) - Dirichlet does not work with concretely typed functions (#1006) - Fix doc warnings and make docs build strict (#1021) - Question for dofs generation in DofHandler (#1042) - The incompressible elasticity example does not work (#1047) - Remove dofhandler from CellCache (#1049) - Possible bug in FerriteMetis (#1065)