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computeLD 2014-01-15 156.6 kB
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FastLD: an efficient tool to compute linkage disequilibrium on modern GPUs

The binary code can be find in ./bin/linix/release/computeLD. It can be run using the following command: computeLD deviceID inputObjectFileName inputTargetFileName outputFileName logFileName threashold

We have provided only two small data files due to the memory limitation of this website for test. The files can be find in ./data/01.hapmap and ./data/02.hapmap.

The program can be run using the following command using the first device on the computer and 0.5 as the threshold(r^2): ./bin/linux/release/computeLD 0 ./data/01.hapmap ./data/02.hapmap result_1_2 log_1_2 0.5
Source: README.txt, updated 2014-01-15