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facepai_release.zip (10.7 kB)
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| Name | Modified | Size | Downloads / Week |
|---|---|---|---|
| Parent folder | |||
| 12S_Teleostein_GB.gb | 2019-09-24 | 26.6 MB | |
| sigsgaard_refs.fasta | 2019-09-24 | 2.3 kB | |
| Sigsgaard_Refs_prepared.fasta | 2019-09-24 | 2.7 kB | |
| GenBank2015_Sigsgaard_Refs_merged.fasta.nsq | 2019-09-24 | 1.4 MB | |
| GenBank2015_Sigsgaard_Refs_merged.fasta.nin | 2019-09-24 | 102.8 kB | |
| GenBank2015_Sigsgaard_Refs_merged.fasta.nhr | 2019-09-24 | 895.5 kB | |
| GenBank2015_Sigsgaard_Refs_merged.fasta | 2019-09-24 | 5.8 MB | |
| GenBank2015_prepared.fasta | 2019-09-24 | 7.1 MB | |
| 12S_Teleostein_GB.fasta | 2019-09-24 | 7.0 MB | |
| Totals: 9 Items | 48.8 MB | 0 | |
FACEPAI (& CaPReSe)
Fast And Consistent Environmental-DNA Processing And Identification (& Conversion and Preparation of Reference Sequences)
Scripts for executing a filtering, clustering and identification pipeline for eDNA samples Emma Wahlberg, Swedish Museum of Natural History, 2019, emma.wahlberg@nrm.se
To install, clone the repository:
git clone https://git.code.sf.net/p/facepai/code facepai
You may also download the facepai_release.zip file and extract on your computer.
Usage and instructions: https://sourceforge.net/p/facepai/code/ci/master/tree/readme.md
Citation:
Wahlberg, E. 2019. FACEPAI – A script for fast and consistent environmental DNA processing and identification. BMC Ecology, in review.