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facepai_release.zip (10.7 kB)
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| Name | Modified | Size | Downloads / Week |
|---|---|---|---|
| Parent folder | |||
| Sed_analysis.log | 2019-04-18 | 61.1 kB | |
| Sed_BLAST_results.tab | 2019-04-18 | 978.4 kB | |
| Sed_1f_representatives.fasta | 2019-04-18 | 450.4 kB | |
| Sed_1f_representatives.uchimeta | 2019-04-18 | 222.8 kB | |
| Sed_1f.statsta | 2019-04-18 | 63.5 kB | |
| Sed_1f.structta | 2019-04-18 | 5.7 kB | |
| Sed_1f.swarmsta | 2019-04-18 | 59.6 kB | |
| Sed.fasta | 2019-04-18 | 473.2 kB | |
| Sed | 2019-04-18 | 648.4 kB | |
| Sed.fas | 2019-04-18 | 473.2 kB | |
| Sed.log | 2019-04-18 | 3.7 kB | |
| fastp.html | 2019-04-18 | 449.3 kB | |
| fastp.json | 2019-04-18 | 179.7 kB | |
| Sed_pooled_F_filtered.fastq | 2019-04-18 | 140.7 MB | |
| Sed_pooled_R_filtered.fastq | 2019-04-18 | 140.7 MB | |
| Sed_pooled_F.fastq | 2019-04-18 | 142.0 MB | |
| Sed_pooled_R.fastq | 2019-04-18 | 142.0 MB | |
| Totals: 17 Items | 569.5 MB | 0 | |
FACEPAI (& CaPReSe)
Fast And Consistent Environmental-DNA Processing And Identification (& Conversion and Preparation of Reference Sequences)
Scripts for executing a filtering, clustering and identification pipeline for eDNA samples Emma Wahlberg, Swedish Museum of Natural History, 2019, emma.wahlberg@nrm.se
To install, clone the repository:
git clone https://git.code.sf.net/p/facepai/code facepai
You may also download the facepai_release.zip file and extract on your computer.
Usage and instructions: https://sourceforge.net/p/facepai/code/ci/master/tree/readme.md
Citation:
Wahlberg, E. 2019. FACEPAI – A script for fast and consistent environmental DNA processing and identification. BMC Ecology, in review.