F-Tracker3D

F-Tracker3D is acronym of "fluorescent cell tracker in three-dimensions". It is a software tool designed to track fluorescent cells using time-lapse z-stacks of images acquired with a confocal or light-sheet microscope. First, each single cell is tracked in 2D by using the maximum intensity projections of the z-stacks and CellTracker, the free open source software available at: www.celltracker.website. Then, the 3D track of each cell is obtained analysing the z-stacks and looking for the z-plane with the maximum intensity value for the different x-y positions previously determined.

F-Tracker3D is written in MATLAB (©, The MathWorks, Inc., Massachusetts, USA) and the source code is freely provided.

Requirements: MATLAB 2015a and Image Processing Toolbox 9.2 or later versions.

Features

Matlab standalone application
3D tracking
CellTracker
Fluorescent cells
Confocal microscope
Light-sheet microscope

Project Samples

F-Tracker3D: automatic plot of the 3D tracks

F-Tracker3D: time-lapse experiment with fluorescent cells floating in a 3D spheroid

F-Tracker3D: main graphical user interface

Project Activity

See All Activity >

License

GNU General Public License version 3.0 (GPLv3)

Follow F-Tracker3D

F-Tracker3D Web Site

Other Useful Business Software

Keep company data safe with Chrome Enterprise

Protect your business with AI policies and data loss prevention in the browser

Make AI work your way with Chrome Enterprise. Block unapproved sites and set custom data controls that align with your company's policies.

Download Chrome

Additional Project Details

Operating Systems

Windows

Languages

English

Intended Audience

Science/Research

Programming Language

MATLAB

Related Categories

MATLAB Bio-Informatics Software, MATLAB Image Processing Software

Registered

2016-10-06

Similar Business Software

Picsart Enterprise

AI-Powered Image & Video Editing for Seamless Integration. Enhance your visual content workflows with Picsart Creative APIs, a robust suite of AI-driven tools for developers, product owners, and entrepreneurs. Easily integrate advanced image and video processing capabilities into your...

See Software
Cellenics

Turn your single-cell RNA sequencing data into meaningful insight with Cellenics software. Biomage hosts a community instance of Cellenics, an open source analytics tool for single-cell RNA sequencing data that has been developed at Harvard Medical School. It enables biologists to explore...

See Software
Loupe Browser

Loupe Browser is a powerful visualization software that provides the intuitive functionality you need to explore and analyze your 10x Genomics Chromium and Visium data. You can also convert your Seurat objects into Loupe Browser files using the LoupeR package. The navigation and interactive...

See Software
Renderforest

Renderforest is an all-in-one branding platform that allows users to create broadcast-quality videos, AI optimized logos, photorealistic mockups, digital and print graphics of all topics and purposes, as well as fully functioning websites. Choose from the ever-growing collection of...

See Software
GIMP

This is the official website of the GNU Image Manipulation Program (GIMP). GIMP is a cross-platform image editor available for GNU/Linux, OS X, Windows and more operating systems. It is free software, you can change its source code and distribute your changes. Whether you are a graphic designer,...

See Software
VistaCreate

VistaCreate (formerly Crello) is a graphic design platform where anyone can quickly create engaging projects for any industry or occasion —design skills optional. Crello joined the Vista group of companies and changed its brand name to VistaCreate. Start with one of 50,000 professionally...

See Software