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| Name | Modified | Size | Downloads / Week |
|---|---|---|---|
| Parent folder | |||
| epipath_schema_molecular_epidemiology_database.pdf | 2007-09-25 | 30.9 kB | |
| epipath_README | 2007-09-25 | 3.1 kB | |
| epipath_molecular_epidemiology_database_design_with_regions.pdf | 2007-09-25 | 558.4 kB | |
| epiPATH_Manualv1_1.pdf | 2007-09-25 | 332.6 kB | |
| Totals: 4 Items | 925.0 kB | 0 | |
########################################################################## # # epiPATH is a bioinformatics platform to store and analyze evolutionary, # population and epidemiological data from infectious pathogens. # # Copyright (C) 2007 Alicia Amadoz and Fernando Gonzalez-Candelas # # This program is free software; you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation; either version 2 of the License, or # any later version. # # This program is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # GNU General Public License for more details. # # You should have received a copy of the GNU General Public License along # with this program; if not, write to the Free Software Foundation, Inc., # 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. # # CONTACT INFORMATION # # Alicia Amadoz Navarro (alicia.amadoz@uv.es) # Fernando Gonzalez-Candelas (fernando.gonzalez@uv.es) # # Evolutionary Genetics Group # Cavanilles Institute for Biodiversity and Evolutionary Biology # University of Valencia # # Address: Instituto Cavanilles de Biodiversidad y Biologia Evolutiva # Poligono de la Coma s/n, 46980 Paterna (Valencia) SPAIN # ########################################################################## INSTALLATION This is a very brieftly installation guide of the epiPATH software versions 1 and 1.1, which included the database schema and database management tools implemented in our previous web user interface. You can have more detailed instructions about installation and configuration in the epiPATH Manual that is included in each distribution. 1 :: Installation and configuration of software requirements. epiPATH requires to have installed the following programs: MySQL (5.0 or later), PHP, HTTP Apache server, MySQL Query Browser. For more details about installation and configuration, see the epiPATH manual. 2 :: Choose one type of distribution: 'With views' or 'Without views'. A view is a logical table composed of the result set of a query and are implemented in MySQL software (5.0 or later). Here, we use views as parts of the database schema that can be accessed by different users. The 'With views' distribution allows to create different logical schemas more appropiate for each user. The 'Without views' distribution does not allow views. 3 :: Install database schema with MySQL Query Browser. Once MySQL is installed, you have to create two databases: 'molecular_epidemiology' and 'dbcontrol_molepi'. Open MySQL Query Browser and execute the database schema scripts, one for each database. 4 :: Download and uncompress the distribution package with the web interface files. In a Windows system either with WinZIP or WinRAR could be unzipped and in a Linux system you can: gunzip distribution_package.tar.gz; and then: tar -xvf distribution_package.tar 5 :: Copy the file tree structure under the apache server file.