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readme.rst 2024-04-19 21.8 kB
Test7_mouse_N81_RRBS_beta.tsv 2024-04-19 1.1 MB
Test7_mouse_N81_RRBS_info.tsv 2024-04-19 3.7 kB
Test2_blood_N80_450K_info.tsv 2024-01-24 1.3 kB
Test6_Placentas_N40_450K_beta.tsv.gz 2024-01-23 89.3 MB
Test6_Placentas_N40_450K_info.tsv 2024-01-23 916 Bytes
Test5_CordBlood_N38_450K_beta.tsv.gz 2024-01-23 68.4 MB
Test5_CordBlood_N38_450K_info.tsv 2024-01-23 821 Bytes
Test2_blood_N80_450K_beta.tsv.gz 2024-01-20 159.4 MB
Test4_brain_N16_EPICv2_info.tsv 2024-01-20 1.7 kB
Test4_brain_N16_EPICv2_beta.tsv.gz 2024-01-20 42.6 MB
Test3_liver_N32_450K_info.tsv 2024-01-20 583 Bytes
Test3_liver_N32_450K_beta.tsv.gz 2024-01-20 46.4 MB
Test1_blood_N20_EPICv1_beta.tsv.gz 2024-01-20 53.9 MB
Test1_blood_N20_EPICv1_info.tsv 2024-01-20 220 Bytes
Totals: 15 Items   461.2 MB 0

Test datasets

We provide six test datasets generated from using Illumina HumanMethylation450 (450K), MethylationEPIC v1.0 (850K), MethylationEPIC v2.0 and RRBS.

Test data 1

  Test data 1
Source Mayo Clinic
Tissue Blood
Platform MethylationEPIC v1.0 (850K)
# of CpG 865859
# of samples 20
Age range (year) (49, 82)
Data file Test1_blood_N20_EPICv1_beta.tsv.gz
MD5 (Data file) 528a5896bcaae4a77757c35c7abcd507
Meta info file Test1_blood_N20_EPICv1_info.tsv

Test data 2

  Test data 2
Source GEO (GSE56105)
Tissue Blood
Platform HumanMethylation450 (450K)
# of CpG 478313
# of samples 80
Age range (year) (10, 60)
Data file Test2_blood_N80_450K_beta.tsv.gz
MD5 (Data file) 95e5f8ca6ab10c015644a0ff03b4b7be
Meta info file Test2_blood_N80_450K_info.tsv

Test data 3

  Test data 3
Source Mayo Clinic
Tissue Liver
Platform HumanMethylation450 (450K)
# of CpG 485512
# of samples 32
Age range (year) (2, 81)
Data file Test3_liver_N32_450K_beta.tsv.gz
MD5 (Data file) a868457bd3d50aadeb5f34d50ef82dc6
Meta info file Test3_liver_N32_450K_info.tsv

Test data 4

  Test data 4
Source GEO (GSE229715)
Tissue Brain
Platform MethylationEPIC v2.0
# of CpG 853304
# of samples 16
Age range (year) (0.4, 77)
Data file Test4_brain_N16_EPICv2_beta.tsv.gz
MD5 (Data file) ec566e0cf5b5dd48ed4797e132b326dd
Meta info file Test4_brain_N16_EPICv2_info.tsv

Test data 5

  Test data 5
Source GEO (GSE62924)
Tissue Cord Blood
Platform 450K
# of CpG 484667
# of samples 38
Age range (week) (34, 41)
Data file Test5_CordBlood_N38_450K_beta.tsv.gz
MD5 (Data file) 0cf912f55a43dbbadaab8fd2371811be
Meta info file Test5_CordBlood_N38_450K_info.tsv

Test data 6

  Test data 6
Source GEO (GSE44667)
Tissue Placental chorionic villus
Platform 450K
# of CpG 430685
# of samples 40
Age range (week) (24, 38)
Data file Test6_Placentas_N40_450K_beta.tsv.gz
MD5 (Data file) 8cb8074657a8b8d1b11e96bd1cce4165
Meta info file Test6_Placentas_N40_450K_info.tsv

Test data 7

  Test data 7
Source GEO (GSE121141)
Tissue Mouse multiple tissue.
Platform RRBS
# of CpG 994
# of samples 81
Age range (days) (180, 900)
Data file Test7_mouse_N81_RRBS_beta.tsv.
MD5 (Data file) 98456e98a2ffddb9e78b048e048279fe
Meta info file Test7_mouse_N81_RRBS_info.tsv
Source: readme.rst, updated 2024-04-19