| Name | Modified | Size | Downloads / Week |
|---|---|---|---|
| ecoli_1.2.zip | 2014-12-18 | 816.9 kB | |
| readme | 2014-12-18 | 1.6 kB | |
| ecoli_1.1.zip | 2013-01-07 | 816.9 kB | |
| ecoli_1.0.zip | 2011-11-26 | 526.4 kB | |
| Totals: 4 Items | 2.2 MB | 0 |
CURRENT VERSION: 1.2
three versions of the network are made available
* ecoli_x.yz.xml, a model for use in flux analyses, in FBC format [http://sbml.org/Community/Wiki/SBML_Level_3_Proposals/Flux_Constraints]
* ecoli_x.yz_cobra.xml, the same model, in Cobra format [http://opencobra.sf.net/]
* ecoli_x.yz_recon.xml, a reconstruction containing only reactions for which there is experimental evidence
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CHECKSUM
maximal growth rate: 0.98 flux units
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CONVERSION SBML TO TEXT FILE
can be performed for example using the Cobra toolbox (http://opencobra.sf.net/) and commands
>> model = readCbModel('ecoli_x.yz_cobra.xml',inf);
>> writeCbModel(model,'text','ecoli_x.yz.txt');
though this is not recommended as semantic annotations may be lost.
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UPDATES
e.coli 1.2: 18 dec 2014
* gene associations in disjunctive normal form (DNF)
* reverted to IDs from original paper
e.coli 1.1: 6 jan 2013
* restructured as per yeast 6.0 (http://yeast.sf.net/)
* now supporting the FBC format [http://sbml.org/Community/Wiki/SBML_Level_3_Proposals/Flux_Constraints]
e.coli 1.0: 25 nov 2011
* semantically-annotated version of iJO1366 (http://dx.doi.org/10.1038/msb.2011.65)
* structured similarly to yeast 5.0 (http://yeast.sf.net/) to facilitate comparative studies