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| Name | Modified | Size | Downloads / Week |
|---|---|---|---|
| Parent folder | |||
| README.txt | 2011-08-31 | 856 Bytes | |
| kmerBuilder.tar | 2011-08-31 | 471.0 kB | |
| Totals: 2 Items | 471.9 kB | 0 | |
kmerBuilder is a very simple tool for constructing kmers
from FASTA files
INSTALLATION
------------
Qt libraries must be installed.
It can be downloaded from (http://qt.nokia.com/downloads)
To compile kmerBuilder, simply run:
make
RUNNING kmerBuilder
-------------
Syntax: kmerBuilder input output [kmerLen]
such that: input = file of sequences
output = kmer's output file
kmerLen= the length of kmers (21 by default)
Note
----
Each line of the output file will contain a kmar and its frequency sperated by a white-space character
ACKNOWLEDGMENTS
---------------
Mohammed Sahli, Tetsuo Shibuya
This work was partially supported by the Grant-in-Aid from the Ministry
of Education, Culture, Sports, Science and Technology of Japan.
CONTACT
-------
Mohammed Sahli: mohammed 'at' hgc.jp
Tetsuo Shibuya: tshibuya 'at' hgc.jp
