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DeNovoGear is a program to detect denovo mutations using sequencing data.
The methods behind DeNovoGear are described in this publication,
http://www.nature.com/nmeth/journal/v10/n10/full/nmeth.2611.html
The production version of the code(updated more frequently) can be found here,
https://github.com/denovogear/denovogear
The releases of major and minor versions of the code are this Sourceforge page.
Features
- Detect denovo point mutations amongst trios.
- Detect denovo indels amongst trios.
- Detect variation amongst paired samples.
- Parental phasing of mutations.
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Thanks for Denovogear, it's wonderful!
