De Novo Assembly From Clinical Trials

Produce high quality de novo assembly to identify pathogens.

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Last Update: 2015-05-16

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UPDATES/ NOTICES WILL BE POSTED TO THE DISCUSSION TAB: http://sourceforge.net/p/denovoassembly/discussion/general/

Given a clinical sample,
*Produce a high quality de novo assembly.
*Use this assembly to identify pathogens present in the sample.
*Determine pathogen significance.

Data:

Human Metagenome:
ftp.ll.mit.edu/outgoing/BCD2/abscess.tar.gz
ftp.ll.mit.edu/outgoing/BCD2/nicaragua.tar.gz
ftp.ll.mit.edu/outgoing/BCD2/oral_diseased.tar.gz
ftp.ll.mit.edu/outgoing/BCD2/oral_healthy.tar.gz
ftp.ll.mit.edu/outgoing/BCD2/palm.tar.gz

Non-Human Metagenome:
ftp.ll.mit.edu/outgoing/environmental1.tar.gz
ftp.ll.mit.edu/outgoing/environmental2.tar.gz
ftp.ll.mit.edu/outgoing/environmental3.tar.gz
ftp.ll.mit.edu/outgoing/BCD2/soil.tar.gz

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Registered

2012-08-28

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