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CWC Simulator

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Description

This is an implementation of CWC (Calculus of Wrapped Compartments), a rewriting-based calculus for the representation and simulation of biological systems.

CWC Simulator Web Site

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Features

  • Gillespie-like simulations over CWC models
  • Hybrid stochastic/deterministic semantics
  • Dynamic cutoff-based semantical reconfiguration
  • Multiple rating functions (mass action, Michaelis-Menten, Hill)
  • Multiple instances of simulation
  • Online statistics (mean and variance under Grubb's test, quantiles, clustering)
  • Optimization for multi-core based on FastFlow framework
  • Both shared-memory and distributed versions

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  • 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5

    Nice, thank you

    Posted 06/22/2013
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Additional Project Details

Registered

2010-08-12

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