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genome.fasta.gz (42.3 MB)
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| Name | Modified | Size | Downloads / Week |
|---|---|---|---|
| Parent folder | |||
| flye.sh | 2021-04-22 | 170 Bytes | |
| analyses_assemblies.R | 2021-04-22 | 10.6 kB | |
| agp_maker.py | 2020-03-30 | 5.3 kB | |
| contig_mapping.R | 2020-03-30 | 2.1 kB | |
| cuscoV2_clusterLen-CS_100xLORE_curated_Salsa.R | 2020-03-30 | 3.0 kB | |
| cuscoV2_clusterLen-PI2_100xLORE_curated_Salsa.R | 2020-03-30 | 3.0 kB | |
| genbankmaker_42AB_3samples.py | 2020-03-30 | 7.6 kB | |
| heterozygosity_with_clusterMidPos.R | 2020-03-30 | 2.5 kB | |
| makColbarFinal.R | 2020-03-30 | 2.1 kB | |
| more-cusco-publ.R | 2020-03-30 | 4.2 kB | |
| overlap_contig-snp_heterozygosity.R | 2020-03-30 | 2.7 kB | |
| short_vs_long-assemblies_METRICS.R | 2020-03-30 | 3.0 kB | |
| sniffles_raw.R | 2020-03-30 | 1.4 kB | |
| SNP_heterozygosity.R | 2020-03-30 | 1.8 kB | |
| introduceBreaks2fasta.py | 2020-03-29 | 3.3 kB | |
| polymorphicSNPs_from_sync.py | 2020-03-29 | 2.0 kB | |
| chopgenome.py | 2020-03-29 | 3.1 kB | |
| coverage_from_pileup.py | 2020-03-29 | 1.2 kB | |
| dmel-consensus.fasta | 2020-03-27 | 618.3 kB | |
| gc_content_teseqs_dmel-consensus.txt | 2020-03-27 | 2.4 kB | |
| racon.sh | 2020-03-27 | 452 Bytes | |
| wtdbg2.sh | 2020-03-27 | 156 Bytes | |
| arima_processing_and_salsa2.sh | 2020-03-27 | 2.8 kB | |
| canu.sh | 2020-03-27 | 431 Bytes | |
| miniasm.sh | 2020-03-27 | 327 Bytes | |
| pilon.sh | 2020-03-27 | 985 Bytes | |
| SNPs+IDs_subsamples_FINAL.R | 2020-03-27 | 60.5 kB | |
| rpm_figures_subsamples_FINAL.R | 2020-03-27 | 18.0 kB | |
| rpm_reg.sh | 2020-03-27 | 462 Bytes | |
| snp_freq_matrix_260819.py | 2020-03-27 | 3.4 kB | |
| SNPs_reg.sh | 2020-03-27 | 284 Bytes | |
| mummerCoordsDotPlotly_mod.R | 2020-03-27 | 14.9 kB | |
| quast.sh | 2020-03-27 | 59 Bytes | |
| readstat2rpm_all_difcons_onlymapped.py | 2020-03-27 | 2.0 kB | |
| deviaTE.sh | 2020-03-27 | 158 Bytes | |
| dotplots.sh | 2020-03-27 | 264 Bytes | |
| GC-content-calculator.py | 2020-03-27 | 631 Bytes | |
| id-matrix_countsonly.py | 2020-03-27 | 2.2 kB | |
| ID_reg.sh | 2020-03-27 | 330 Bytes | |
| busco.sh | 2020-03-27 | 182 Bytes | |
| BUSCO_vs_CUSCO_downsamples.R | 2020-03-27 | 8.0 kB | |
| create-reads-for-te-sequences_mod.py | 2020-03-27 | 3.1 kB | |
| create_artificial_reads.sh | 2020-03-27 | 190 Bytes | |
| Totals: 43 Items | 799.6 kB | 0 | |