cupSODA Files

Deterministic simulator of mass-action based models

Status: Beta

Brought to you by: marconobile

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Name	Modified	Size	InfoDownloads / Week
Parent folder
README.markdown	2015-06-06	759 Bytes	0
cupSODA.h	2015-06-06	12.7 kB	0
input_reader.cpp	2015-06-06	5.5 kB	0
input_reader.h	2015-06-06	626 Bytes	0
kernel.cu	2015-06-06	20.5 kB	0
service_stuff.h	2015-06-06	1.8 kB	0
stoc2det.cpp	2015-06-06	25.9 kB	0
stoc2det.h	2015-06-06	2.5 kB	0
constants.h	2015-06-06	571 Bytes	0
COPYING	2015-06-06	1.1 kB	0
cupSODA.cu	2015-06-06	221.1 kB	0
Totals: 11 Items		293.0 kB	0

cupSODA release 1.0

ABOUT

cupSODA is a black-box deterministic simulator of biological systems that exploits the remarkable memory bandwidth and computational capability of GPUs. cupSODA allows to efficiently execute in parallel large numbers of simulations, which are usually required to investigate the emergent dynamics of a given biological system under different conditions. cupSODA works by automatically deriving the system of ordinary differential equations from a reaction-based mechanistic model, defined according to the mass-action kinetics, and then exploiting the numerical integration algorithm, LSODA.

DEPENDENCIES

Just the Nvidia CUDA library.

LICENSE

BSD License

CONTACT

nobile@disco.unimib.it

Source: README.markdown, updated 2015-06-06

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