CSBB is a command line-based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is implemented in Perl, while it also leverages the use of R, java, python and ruby in background for specific modules. Major focus of CSBB is to allow users from biology and bioinformatics community, to get benefited by performing down-stream analysis tasks while eliminating the need to write programming code. CSBB is currently available on Linux, UNIX.

Currently CSBB provides 18 modules focused on analytical tasks like performing upper-quantile normalization, interactive visualization and next generation sequencing pipelines. CSBB now also has capability to process public data. Providing User with End to End pipeline experience.

Features

  • RNA-Seq
  • ChIP-Seq
  • ATAC-Seq
  • Normalization
  • Differential Expression
  • Public Data Processing
  • End to End Pipelines
  • Open Source
  • Visualization
  • Bioinformatics

Project Activity

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Categories

Build Tools, Bio-Informatics

License

GNU General Public License version 3.0 (GPLv3)

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CSBB-v3.0 Web Site

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Additional Project Details

Operating Systems

Linux, Mac

Intended Audience

Science/Research

Programming Language

Perl

Related Categories

Perl Build Tools, Perl Bio-Informatics Software

Registered

2018-05-09
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