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README FILE

CS-AMPPred: The Cysteine Stabilized Antimicrobial Peptides Predictor
Copyright (C) 2012, União Brasiliense de Educação e Cultura, UBEC
All Rights Reserved

	CS-AMPPred is based on SVM Light (Joachims et al., 1998)
	for details about SVM Light, please see

	<http://svmlight.joachims.org/>

	CS-AMPPred was written by W.F. Porto
	with help from A.S. Pires and O.L. Franco
	and developed at Centro de Análises Proteômicas e Bioquímicas,
	Universidade Católica de Brasília, Brasília, Brazil

	This program comes with ABSOLUTELY NO WARRANTY; 
	This is free software, and you are welcome to redistribute it 
	under certain conditions.

CONTENTS
I.	SYSTEM REQUIREMENTS
II.	INSTALLATION
III.	CITATION
IV.	SEE ALSO


I. SYSTEM REQUIREMENTS

The CS-AMPPred runs at any Linux Machine. Other operational systems are not supported.

II. INSTALLATION

Open the terminal and go to the folder where you downloaded the CS-AMPPred compressed file. Then uncompress the archive by running the command:

	tar -vzxf CS-AMPPred.tar.gz

Now, as the system administrator, go to the folder CS-AMPPred and run the following command:

	sudo ./INSTALL

And this is it! So run csamppred -h for help.

III. CITATION

If you use CS-AMPPred, please cite:

	Porto W.F., Fernandes, F.C. and Franco, O.L. (2010) An SVM model based on physicochemical properties to predict antimicrobial activity from protein sequences with cysteine knot motifs. Lecture Notes in Computer Science. 6268, 59-62

	Porto W.F., Pires, A.S. and Franco, O.L. (2012) CS-AMPPred: An Updated SVM Model for Antimicrobial Activity Prediction in Cysteine-Stabilized Peptides. Plos One. 7(12), e51444.
	

IV. SEE ALSO

SVM Light <http://svmlight.joachims.org/>
Source: README.1st, updated 2012-12-14