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readme.txt 2015-05-05 845 Bytes
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crossmap-allow-system-pysam.patch 2015-02-27 4.2 kB
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Use system-level installed pysam module:

attached is a patch to setup.py that makes building the in-tree version
of pysam optional.  It is still built by default, so even with this
patch applied nothing will change unless it is asked for.

To ask for the system pysam to be built two conditions must be met:

1) pysam has to be importable
2) the environment variable CROSSMAP_USE_SYSTEM_PYSAM needs to be set

The attached patch applies cleanly to the release tarball
v0.1.6. and v0.1.7  You should be able to apply it with

    cd CrossMap-0.1.7
    patch -p1 < path/to/crossmap-allow-system-pysam.patch

Thank you for your consideration!  If there's anything you are not happy
with, please do let me know.  I don't want to make you any busier than
you already are.

Provided by:
Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
February 26, 2015
Source: readme.txt, updated 2015-05-05