CoreAlyze

CoreAlyze analyzes the coverage and completeness of a curated set of widely-conserved, mostly single copy in one or more input test genomes. The characteristics of this subset provide insight into the coverage and fragmentation of the input gene set as a whole. CoreAlyze places its findings in context with other gene sets, adding to the robustness of the results. CoreAlyze also provides phylogenetic and biological information about input genomes.

Project Samples

CoreAlyze analysis of 12 Plasmodium gene sets

About the icon. The star represents the set of core orthologs. Missing orthologs are represented by empty slots (white in the bar plot). Fragmented orthologs are represented by sliced seeds (blue - red in the bar plot). Complete orthologs are represented by whole seeds (purple in bar plots).

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