Code-Graph-RAG Files

Highlights

• File System Operations: Improved handling of file system operations with platform-neutral joins and safeguards against removing project root.
• Cache Management: Enhanced cache management with atomic publishing, dedicated cache stamps, and improved deletion handling for orphan caches.
• Graph Querying: Introduced deterministic graph query tools for more precise analysis of code relationships.
• Re-ingestion & Parsing: Improved re-ingestion processes, including handling of deleted files, re-parsing of related files, and rebuilding of key data structures.
• Security & Stability: Addressed security concerns by blocking removal of project root and improved stability by preventing skipped edits and handling orphaned caches.
• C++ & Go Integration: Enhanced integration with C++ and Go, including parsing of module interfaces and handling of module-level class aliases.
• Testing & CI: Improved test coverage and CI processes, including cancelling superseded PR runs and ensuring proper evaluation of edge cases.

New Contributors

• @qinghuanandejiangshi made their first contribution in https://github.com/vitali87/code-graph-rag/pull/1684
• @atirna made their first contribution in https://github.com/vitali87/code-graph-rag/pull/1730
• @dajiaohuang made their first contribution in https://github.com/vitali87/code-graph-rag/pull/1729
• @Bortlesboat made their first contribution in https://github.com/vitali87/code-graph-rag/pull/1791

Full Changelog: https://github.com/vitali87/code-graph-rag/compare/v0.0.845...v0.0.895

What's Changed

• fix: judge git repo-location targets with a platform-neutral join by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1662
• fix: judge rm targets with a platform-neutral join by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1666
• fix: make the safe teardown the default for read-only trees under tmp_path (#1622) by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1648
• fix: same-stem siblings get the module qns a clean index gives them when one is added or deleted by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1573
• fix: a reused updater drops a deleted file's in-memory state before Pass 2 and starts Pass 3 with empty resolver caches by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1576
• fix: a value receiver never constructs, so value.Name() must not resolve to a class (#1641) by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1678
• feat: single-file scoped re-ingest with an interactive latency budget by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1538
• test: share one CLI subprocess deadline with real headroom (#1655) by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1683
• fix(security): block rm targeting project root by @qinghuanandejiangshi in https://github.com/vitali87/code-graph-rag/pull/1684
• fix: publish the hash cache atomically with its stamp (#1646) by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1656
• fix: give the scoped re-ingest its own cache-stamp log constants by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1690
• fix: flush the orphan-prune deletes before the caches commit (#1645) by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1674
• fix: sweep deleted-file state on recorded module qns, not path-derived (#1676) by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1689
• fix: a nested class is not a self-dispatch target, so self.Inner() emits no CALLS to it (#1650) by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1694
• feat: return and parameter types as first-class graph facts by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1539
• ci: cancel superseded PR runs of Sonar, OSV, split score and the review workflow by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1699
• fix: probe formatters by invoking them, not by finding them on PATH (#1639) by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1697
• fix: scope single-file GraphUpdater runs so they cannot sweep siblings or truncate the cache (#1619) by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1664
• fix: compare tree-sitter nodes by value when skipping the import base (#1703) by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1706
• fix: compare tree-sitter nodes by value in the property-access guard (#1702) by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1704
• fix: do not paste a failed advisory API response into release notes by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1653
• fix: let an exact unignore line rescue a minified bundle (#1637) by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1696
• fix: rebuild the rehydrated qn sets instead of accumulating them (#1677) by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1688
• fix: recover the watcher after a re-ingest that failed part way through (#1681) by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1695
• fix: sweep definitions keyed outside the re-parsed file's own module (#1659) by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1710
• feat: deterministic graph query tools: resolve, definition, callers, callees, implementors, overrides, importers, tests_reaching by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1542
• fix: let a run finish and rebuild when an orphaned cache cannot be discarded (#1647) by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1693
• fix: re-parse importers waiting on a file the re-ingest created (#1682) by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1698
• fix: re-parse files that define into a departing module (#1660) by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1713
• fix: rebuild the C++ interface set instead of accumulating it (#1692) by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1715
• fix: probe the node and dotnet oracle toolchains for capability, not presence (#1639) by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1707
• fix: make the module-qn rule a parser fingerprint input (#1720) by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1722
• fix: record unresolved relative specifiers so dropped-edge importers stay findable (#1714) by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1717
• test: emulate the unanswered queries and make the eval double fail closed (#1716) by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1723
• fix: give the deletion ownership set the same path-derived fallback as the sweep (#1719) by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1724
• fix: give a declaration file the module identity importers resolve to by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1728
• fix: distrust a hash-cache stamp from the future so edits are not skipped (#1665) by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1726
• fix: parse .mxx C++ module interfaces and derive the module set from the parsed set by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1732
• fix: stamp the parser fingerprint at the post-flush commit point, not inside _process_files by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1733
• fix: strip inherited GIT_* routing and count only loose objects in the readonly cleanup test by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1734
• test: require the rehydration pass to rebuild the C++ interface set, not merely keep the edge by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1735
• fix: forget a deleted Go file's return-type entries and rebuild the package index by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1739
• chore: turn off CodeRabbit's docstring-coverage pre-merge check to match the PR template by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1742
• fix: a Delombok-forced re-parse deletes the file's old subtree instead of stacking a second parse by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1745
• fix: parse a C file's #include directives so it emits the same IMPORTS edge a header does by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1746
• test: fail the peak-memory invariance only on a drift a leak could cause by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1749
• fix: hold a bold in a news bullet's body to the feature-theme rule by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1748
• fix: create the hash-cache temporary with an unpredictable no-follow exclusive open (#1700) by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1701
• fix: a run rooted at a path that is neither a file nor a directory raises instead of indexing nothing by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1740
• test: state the rewrite-after-run mtime precondition in the remaining incremental tests by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1743
• fix: preserve nested-class construction for optional receivers by @atirna in https://github.com/vitali87/code-graph-rag/pull/1730
• fix: name a Lua function built into a table constructor by its field key under its table by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1750
• fix: prune a deleted file's method return types with the same ownership filter as its registry rows by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1752
• test: pin that rehydration re-adds a C++ module interface held only by the graph by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1754
• fix: a single-file target deleted after construction is removed from state and cache rather than skipped as unreadable by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1755
• fix: match the std token when prefixing a system include so stdio.h lands under std. like signal.h by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1757
• test: split every composite assertion into one assertion per operand (Sonar S9073) by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1760
• test: one raising call per pytest.raises block (Sonar S5778) by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1761
• refactor: merge the three remaining pairs of identical branches (Sonar S1871) by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1763
• chore: pytest.fail over assert False, returning fixtures without teardown, no empty match arms (Sonar S9077, S9100, S108) by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1764
• fix: reap the integration suite's orphaned Memgraph containers at session start by label by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1751
• feat: record Go struct construction as INSTANTIATES from composite literals by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1747
• refactor: split resolve_class_name into its three lookup steps (Sonar S3776) by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1766
• refactor: split the C++ field-declarator name reader and the Go selector walk (Sonar S3776) by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1767
• refactor: collect dead-code roots through one predicate instead of eighteen identical branches (Sonar S1871) by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1762
• fix: a module-level class alias is a class receiver, so Alias.Inner() constructs like Outer.Inner() by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1759
• refactor: accumulate one sampled speedscope stack in its own helper (Sonar S3776) by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1765
• refactor: split the pubspec line scanner and the C# base-name reader (Sonar S3776) by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1770
• refactor: split the C++ include parser and the macro body scan (Sonar S3776) by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1771
• feat: edge resolution confidence and trace write-back by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1543
• fix: prune a deleted file's C# method return types with the same ownership filter as the other return-type maps by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1768
• test: treat a try body and its else as one path in the evals shadowing guard by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1741
• fix: prune seeded module qns the graph no longer holds (#1687) by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1711
• feat: structural delta after every write tool and cgr check (#1525) by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1546
• fix: prune the four remaining C# side tables when a file is deleted (#1769) by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1778
• fix: a single-file run must not prune Modules it never walked (#1756) by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1779
• feat: persist the incomplete-run marker so a fresh MCP process refuses reingest (#1679) by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1705
• fix: include class methods in semantic embeddings by @dajiaohuang in https://github.com/vitali87/code-graph-rag/pull/1729
• fix: name header ExternalModules by the header, and keep every include's edge (#1758) by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1780
• fix: reingest prunes the seeded module-qn map, with its own re-parsed paths (#1712) by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1785
• feat: rename edit operation driven by the graph with ambiguity refusal (#1532) by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1545
• fix: prune the two class-keyed maps when a file leaves the state (#1772) by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1795
• fix(java): avoid recursion limits in variable collection by @Bortlesboat in https://github.com/vitali87/code-graph-rag/pull/1791
• build(deps): bump the uv group across 1 directory with 3 updates by @dependabot[bot] in https://github.com/vitali87/code-graph-rag/pull/1802
• fix: mark wipes complete after embedding cleanup by @Bortlesboat in https://github.com/vitali87/code-graph-rag/pull/1793
• fix(cpp): retract import state for deleted files by @Bortlesboat in https://github.com/vitali87/code-graph-rag/pull/1792
• fix: memoise C# chained-call resolution so fluent chains are linear (#1800) by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1801
• feat: run fuzzing continuously with ClusterFuzzLite (#1731) by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1796
• fix: fuzz the rm-path guard the shell harness was skipping (#1731) by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1803
• fix: re-index a deleted path that is still present on disk by @vitali87 in https://github.com/vitali87/code-graph-rag/pull/1815

New Contributors

• @qinghuanandejiangshi made their first contribution in https://github.com/vitali87/code-graph-rag/pull/1684
• @atirna made their first contribution in https://github.com/vitali87/code-graph-rag/pull/1730
• @dajiaohuang made their first contribution in https://github.com/vitali87/code-graph-rag/pull/1729
• @Bortlesboat made their first contribution in https://github.com/vitali87/code-graph-rag/pull/1791

Full Changelog: https://github.com/vitali87/code-graph-rag/compare/v0.0.845...v0.0.895