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README 2016-01-27 929 Bytes
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variables.txt 2016-01-27 549 Bytes
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GSE18199_SRR027958_GM22_R2_001.fq.gz 2015-12-30 615.8 MB
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GSE18199_SRR027958_GM22_R1_001.fq.gz 2015-12-30 27.0 MB
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Totals: 4 Items   642.8 MB 0 
############################

HiC example data(GSE18199)
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Specie: human
Reference genome sequence: Assembly GRCh38
enzme site: HindIII AAGCTT
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#Guideline of running example HiC data 
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make sure the installation of 3C-analyzer and bowtie2 before running example data.

1. uncompress fastq files (R1 and R2) and copy them in the directory known as ./raw_data
2. copy the file variables.txt into the directory ./result
3. copy the genome references fasta file into the directory ./references
4. run this command line :
	perl main_HiC.pl ./result/variables.txt

Note: This dataset is only an example after removing paired-end read sequences without junction DNAs, and test passed by 3C-analyzer v1.2
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Citation: 

Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome. Science 326, 289(2009).

Tiezheng Yuan 20150520
Source: README, updated 2016-01-27