Chipster is a biologist-friendly analysis software for high-throughput data. It contains over 200 analysis tools for next generation sequencing (NGS), microarray and proteomics data. Users can combine tools in automatic analysis workflows, which can be shared. Chipster's interactive visualizations allow users to select datapoints and create new gene lists. For NGS data Chipster contains a built-in genome browser, which highlights SNPs and automatically indexes BAM files and calculates coverage.

Chipster’s ability to provide a biologist-friendly access to a powerful analysis platform is technically based on a desktop application user interface, a flexible distributed architecture, and the ability to integrate many types of analysis tools (command line, R/Bioconductor, Java, Web Services etc). The platform is generic and easily extendable to other areas, even beyond bioinformatics.

For more information, please see http://chipster.csc.fi and http://genomebiology.com/1471-2164/12/

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License

GNU General Public License version 2.0 (GPLv2)

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Additional Project Details

Intended Audience

Developers, Education, End Users/Desktop, Healthcare Industry, Science/Research, System Administrators

User Interface

Java Swing

Programming Language

Java, S/R

Related Categories

Java Bio-Informatics Software, Java Data Visualization Software, Java Medical Software, S/R Bio-Informatics Software, S/R Data Visualization Software, S/R Medical Software

Registered

2007-10-04