ChIPseqTools

An integrated bioinformatics toolkit for analysis of ChIPseq data from the Illumina DNA sequencing platform. Includes filtering, quality control, simulation, peakfinding, visualization, and comparison of samples.

Features

Genome scale restriction enzyme tool
Simulated data files for Illumina paired-end reads

Project Samples

Genome Scanner visualization of ChIP and RNAseq data

HaeIII fragments of mouse chr19, bed file viewed on UCSC

Project Activity

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License

GNU Library or Lesser General Public License version 2.0 (LGPLv2)

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ChIPseqTools Web Site

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Additional Project Details

Intended Audience

Science/Research

Programming Language

Java, Perl

Related Categories

Perl Bio-Informatics Software, Java Bio-Informatics Software

Registered

2010-11-12

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