Converts DNA or amino-acid feature GFF3 coordinates contained within sub-features (e.g. ORF/CDS) to coordinates relative to the parent sub-features (e.g. contig/scaffold). Also includes tools for proteogenomic gene validation and gene discovery.

Features

  • Converts DNA or amino-acid feature GFF3 coordinates contained within sub-features (e.g. ORF/CDS) to coordinates relative to the parent sub-features (e.g. contig/scaffold).
  • Includes tools to compare mapped proteogenomic peptide data to gene-annotations for validation and gene discovery
  • reports frameshift errors in CDS annotations
  • reports potential exon-boundary errors in CDS annotations
  • reports potential new genes (proteogenomic peptides non-overlapping with gene annotations)

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Registered

2010-09-10
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