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HapMapcM.gz 2014-11-01 22.7 MB
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README 2014-11-01 915 Bytes
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#################################
##             CCH             ##
## A. P. Levine and D. P. Gale ##
#################################

Combinatorial Conflicting Homozygosity
Release Version 1.1
12th October 2014

	CCH_1.1.pdf
		Instructions

	CCH_v1.1.py
		Latest version of CCH
	CCH_v1.1_py3.py
		For Python versions >=3

	CCH_prepare_input.py
		Convert PLINK format to SNP format
	CCH_prepare_input_py3.py
		For Python versions >=3
		
	CCH_from_vcf.py
		Convert VCF format to SNP format
	CCH_from_vcf_py3.py
		For Python versions >=3
		
	HapMapcM.gz
		HapMap recombination map used to convert from VCF to SNP format

	example.snp
		Example input file in SNP format
		
	t_example.tped
	t_example.tfam
		Example input files in PLINK Transposed format
		
	individuals.txt
		Example individuals file
		
	output.txt
		Example output file

	output.pdf
		Example output plot
Source: README, updated 2014-11-01