Home / scripts / input / test
Name Modified Size InfoDownloads / Week
Parent folder
FT5.txt 2018-07-30 524.7 kB
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FT4.txt 2018-07-30 1.8 MB
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FT3.txt 2018-07-30 1.6 MB
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FT2.txt 2018-07-30 116.7 kB
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FT1.txt 2018-07-30 647.5 kB
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CG5.fasta 2018-07-30 2.5 MB
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CG4.fasta 2018-07-30 4.3 MB
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CG3.fasta 2018-07-30 4.1 MB
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CG2.fasta 2018-07-30 649.9 kB
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CG1.fasta 2018-07-30 2.6 MB
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CDS5.txt 2018-07-30 2.6 MB
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CDS4.txt 2018-07-30 4.4 MB
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CDS3.txt 2018-07-30 4.0 MB
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CDS2.txt 2018-07-30 647.5 kB
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CDS1.txt 2018-07-30 2.9 MB
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Totals: 15 Items   33.3 MB 0 
You can find here all script files and supplementary materials of the paper entitled "Análise de composição de conjunto de treinamento para avaliação de aprendizagem de máquina aplicada à predição de genes", available at ...

Files were organized into 2 folders, as follows:

| docs: Folder which contains supplementary docs with additional information
---| Results_by_Species.pdf: File which contains all results by species
---| Genomes.pdf: File which contains all genome names used
| scripts: Folder which contains the scripts used to predict genes in metagenomic sequences
---| input: Folder with annotated genomes
   ---|train: Folder with annotated genomes used to train
   ---|test: Folder with annotated genomes used to test
---| output: Folder with generated models
---| dataPreProcessing.R: Script to preprocess data
---| extractSequences.R: Script to extract sequences
---| functions.R: Script which contains all functions used
---| getTableFeatures.R: Script to get a table with features from data
---| main.R: Script to run train and test scripts
---| modelGenerating.R: Scrit to generate models
---| PaperPrediction.Rproj: Gene prediction project
---| prediction.R: Script to predict genes
---| readFragGeneScanResults.R: Script to read FragGeneScan results
---| retirar_ids.sh: Script to remove ids
Source: README.txt, updated 2018-08-01