BSB18 Genes Files

You can find here all script files and supplementary materials of the paper entitled "Análise de composição de conjunto de treinamento para avaliação de aprendizagem de máquina aplicada à predição de genes", available at ...

Files were organized into 2 folders, as follows:

| docs: Folder which contains supplementary docs with additional information
---| Results_by_Species.pdf: File which contains all results by species
---| Genomes.pdf: File which contains all genome names used
| scripts: Folder which contains the scripts used to predict genes in metagenomic sequences
---| input: Folder with annotated genomes
   ---|train: Folder with annotated genomes used to train
   ---|test: Folder with annotated genomes used to test
---| output: Folder with generated models
---| dataPreProcessing.R: Script to preprocess data
---| extractSequences.R: Script to extract sequences
---| functions.R: Script which contains all functions used
---| getTableFeatures.R: Script to get a table with features from data
---| main.R: Script to run train and test scripts
---| modelGenerating.R: Scrit to generate models
---| PaperPrediction.Rproj: Gene prediction project
---| prediction.R: Script to predict genes
---| readFragGeneScanResults.R: Script to read FragGeneScan results
---| retirar_ids.sh: Script to remove ids