| Name | Modified | Size | Downloads / Week |
|---|---|---|---|
| Parent folder | |||
| bowtie2-2.5.5-sra-linux-x86_64.zip | 2026-03-07 | 151.2 MB | |
| bowtie2-2.5.5-sra-linux-aarch64.zip | 2026-03-07 | 98.7 MB | |
| bowtie2-2.5.5-mingw-x86_64.zip | 2026-03-07 | 56.5 MB | |
| bowtie2-2.5.5-macos-arm64.zip | 2026-03-07 | 16.0 MB | |
| bowtie2-2.5.5-linux-x86_64.zip | 2026-03-07 | 136.1 MB | |
| bowtie2-2.5.5-linux-aarch64.zip | 2026-03-07 | 91.2 MB | |
| README.md | 2026-02-17 | 464 Bytes | |
| v2.5.5 source code.tar.gz | 2026-02-17 | 10.6 MB | |
| v2.5.5 source code.zip | 2026-02-17 | 10.8 MB | |
| Totals: 9 Items | 571.2 MB | 0 | |
Version 2.5.5 - Feb 16, 2026
bowtie2
* Added `-d` command line option that makes `-a`/`-k`
deterministic in the way alignments are reported. This
deterministic mode runs much significantly faster than `-a` and
consumes less memory. It not yet strictly better than `-a` when
considering alignments found. (PR #520, 521)
* Add support for selecting AVX version at runtime on x86_64/amd64
CPUs. (PR #515)