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bowtie2-2.5.5-linux-x86_64.zip (136.1 MB)
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| Name | Modified | Size | Downloads / Week |
|---|---|---|---|
| Parent folder | |||
| bowtie2-2.5.4-win-x86_64.zip | 2024-05-17 | 49.6 MB | |
| bowtie2-2.5.4-sra-linux-x86_64.zip | 2024-05-17 | 101.5 MB | |
| bowtie2-2.5.4-sra-linux-aarch64.zip | 2024-05-17 | 98.8 MB | |
| bowtie2-2.5.4-macos-arm64.zip | 2024-05-17 | 16.2 MB | |
| bowtie2-2.5.4-linux-x86_64.zip | 2024-05-17 | 94.1 MB | |
| bowtie2-2.5.4-linux-aarch64.zip | 2024-05-17 | 91.4 MB | |
| README.md | 2024-05-17 | 725 Bytes | |
| v2.5.4 source code.tar.gz | 2024-05-17 | 10.6 MB | |
| v2.5.4 source code.zip | 2024-05-17 | 10.8 MB | |
| Totals: 9 Items | 472.9 MB | 0 | |
bowtie2
- Added
--sam-opt-configcommand line option for toggling SAM Opt flags. See MANUAL for details. - Fixed an issue causing
bowtie2's memory usage to increase over time when aligning BAM files. - Changed bowtie2 to continue flushing output in the event of a partial write.
- Changed the behavior of
bowtie2-buildto throw an exception if it is unable to write the BWT (.1.bt2, .1.rev.bt2). In prior versionsbowtie2-build, would silently ignore the error which has led some to report the absence of the BWT files in a "completed" index build. - Reverted the changes made in v2.5.0 that sometimes caused unique concordant alignments to be over-counted.
