Download Latest Version blastplot0.2.tgz (3.8 MB)
Email in envelope

Get an email when there's a new version of blastplot

Home
Name Modified Size InfoDownloads / Week
readme 2014-02-26 1.1 kB
blastplot0.2.tgz 2014-02-26 3.8 MB
blastplot.tgz 2013-09-24 4.4 MB
Totals: 3 Items   8.1 MB 1
Blastplot
Author: J. Enrique Herrera-Galeano, Ph.D.

To start:

1. Download the blastplot.tgz file
2. Extract 
   >tar -xzvf blastplot.tgz
3. The extracted folder will be called src
4. cd src
5. To run blastplot simply execute
   >perl nmrc_blastplot.pl  test1.blastn HIV1.fa    

where:  nmrc_blastplot.pl  is a simple driver for the
BLASTPLOT package, test1.blastn is a blastn output file 
and  HIV1.fa is the fasta file with the query sequences.

This is all you need to run the package, below there is some additional
documentation about the package.


Extended documentation:

A second example can be run as:
>perl nmrc_blastplot.pl  test1.blastn test1.fa

This example illustrates how the file test1.fa contains only the
sequences for which plots are wanted. BLASTPLOT generates plots for only
the sequences prensent in test1.fa.
BLASTPLOT generates the following message:
 "21676 blast entries had not corresponding sequence!"
This message indicates that the blast output file has some results for sequences that were not present on the fasta file.
   

Any questions:
email: jenriqueherrera@gmail.com
Source: readme, updated 2014-02-26