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blastplot Overview

A simple and easy to use perl package to plot blast output results

The development of Next Generation Sequencing (NGS) during the last decade has created an unprecedented amount of sequencing data, as well as the ability to rapidly sequence specimens of interest. Read-based BLAST analysis of NGS data is a common procedure especially in the case of metagenomic samples. However, coverage is usually not enough to allow for de novo assembly. This type of read-based analysis often creates the question of how a set of reads that align to the same sequence is distributed. The same question applies to preparation of primers or probes for microarray experiments.
We have created BLASTPLOT, a PERL module to quickly plot the BLAST results from short sequences (primers, probes, reads) against reference targets.
BLASTPLOT is a simple to use PERL module that allows the generation of PNG graphs for all the reference sequences associated with a BLAST result set.
BLASTPLOT has only two PERL package dependencies: Math::Round and GD.

Additional Details for blastplot

Registered

2013-09-23

Last Updated

2014-02-26

Maintainers

jesuse1998

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