BioFVM

BioFVM is an open source diffusive transport solver for biological problems. It can solve for the diffusion of tens or hundreds of substrates on large 3-D domains. For simplicity, the code has minimal external dependencies.

BioFVM was first published in:

A. Ghaffarizadeh, S.H. Friedman, and P. Macklin. BioFVM: an efficient, parallelized diffusive transport solver for 3-D biological simulations. Bioinformatics 32(8): 1156-8, 2016.

DOI: 10.1093/bioinformatics/btv730

method paper: http://dx.doi.org/10.1093/bioinformatics/btv730

Features

simultaneously solve diffusion of many substrates
powerful even on desktop workstations
OpenMP parallelization
cross-platform
minimal dependencies

Project Samples

Simulation of oxygen and VEGF transport in a vascularized tumor. From dx.doi.org/10.1093/bioinformatics/btv730

3D cellular automaton model of tumor spheroid drug response, using BioFVM

Project Activity

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License

BSD License

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BioFVM Web Site

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Additional Project Details

Operating Systems

BSD, Cygwin, Linux, MinGW/MSYS2, Windows

Intended Audience

Developers, Education, Engineering, Science/Research

Programming Language

C++

Related Categories

C++ Simulation Software, C++ Mathematics Software

Registered

2015-09-18

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