Athus

This project assists you in performing population genetic analyses by taking over the ugly, boring and error-prone data manipulation steps.
Starting from well specified input formats VCF, BED and FASTA and a unique configuration file describing data (f.e. from SNP-arrays or sequencing) as well as filtering one can create standard POPGEN formats like Eigenstrat, PEDMAP (PLINK), Treemix ...
In addition there are several utilities for
* generating VCF from SNPArray data (NCBI - GEO, Illumina call files)
* work with genetic maps ...

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License

GNU Library or Lesser General Public License version 3.0 (LGPLv3)

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Additional Project Details

Operating Systems

Linux

Languages

English

Intended Audience

Science/Research

User Interface

Console/Terminal, Command-line

Programming Language

Java

Related Categories

Java Bio-Informatics Software

Registered

2013-09-19

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