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| Name | Modified | Size | Downloads / Week |
|---|---|---|---|
| README1.2.txt | 2017-08-24 | 1.0 kB | |
| physical_depth_chimeric | 2017-08-24 | 6.0 MB | |
| samechr.sh | 2017-08-24 | 1.1 kB | |
| difchr.sh | 2017-08-24 | 1.1 kB | |
| check_difchr_cluster | 2017-08-24 | 6.0 MB | |
| check_samechr_cluster | 2017-08-24 | 6.0 MB | |
| BCA.tar.gz | 2017-07-25 | 195.0 MB | |
| README.txt | 2017-07-25 | 1.0 kB | |
| Totals: 8 Items | 213.1 MB | 0 |
Updated files include: ./physical_depth_chimeric ###################include the classification of whether -M option was set when BWA mem alignment was performed ./CRA/check_difchr_cluster ./CRA/check_samechr_cluster ./CRA/Difchr/difchr.sh ./CRA/Samechr/samechr.sh #############The other four programs/shells/ include insert size to classify the small-insert or mate-pair library as they have different orientations of alignment ##############################Please put these programs/shells into the certain paths to replace the older ones before running the whole pipeline##################### Command line revised as below: Step1. ./physical_depth_chimeric ./BAM ./difchr.gz ./samechr.gz <alignment method: aln or mem> <M|N: -M option for mem> <path for samtools (use absolute address)> Step5. sh ./CRA/Difchr/difchr.sh ./difchr.fil.sort.final.gz <sample ID> <ethnic pop:AFR,AMR,ASN,EUR,SAN> <500|5000> Step6. sh ./CRA/Samechr/samechr.sh ./samechr.fil.sort.final.gz <sample ID> <ethnic pop:AFR,AMR,ASN,EUR,SAN> <500|5000>