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BayesRate is a program to estimate speciation and extinction rates from dated phylogenies in a Bayesian framework.
The methods are described in:
Silvestro, D., Schnitzler, J. and Zizka, G. (2011) A Bayesian framework to estimate diversification rates and their variation through time and space. BMC Evolutionary Biology, 11, 311
Silvestro D., Zizka G. & Schulte K. (2014) Disentangling the effects of key innovations on the diversification of Bromelioideae (Bromeliaceae). Evolution, 68, 163-175.
Features
- Since version 1.64 BayesRate requires Dendropy v. 4 (v. 3 no longer supported)
- Since version 1.3, Python library DendroPy is required instead of rpy2
- Added BiSSE-BMA since version 1.5 (Silvestro et al. 2013; DOI: 10.1111/evo.12236)
Categories
Bio-InformaticsLicense
GNU General Public License version 2.0 (GPLv2)Follow BayesRate
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User Reviews
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Very useful. Thanks.