BayesRate

BayesRate is a program to estimate speciation and extinction rates from dated phylogenies in a Bayesian framework.
The methods are described in:

Silvestro, D., Schnitzler, J. and Zizka, G. (2011) A Bayesian framework to estimate diversification rates and their variation through time and space. BMC Evolutionary Biology, 11, 311

Silvestro D., Zizka G. & Schulte K. (2014) Disentangling the effects of key innovations on the diversification of Bromelioideae (Bromeliaceae). Evolution, 68, 163-175.

Features

Since version 1.64 BayesRate requires Dendropy v. 4 (v. 3 no longer supported)
Since version 1.3, Python library DendroPy is required instead of rpy2
Added BiSSE-BMA since version 1.5 (Silvestro et al. 2013; DOI: 10.1111/evo.12236)

Project Activity

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License

GNU General Public License version 2.0 (GPLv2)

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tfileme Posted 2013-05-19

Very useful. Thanks.

1 user found this review helpful.

Additional Project Details

Operating Systems

Linux, Mac, Windows

Programming Language

Python, S/R

Related Categories

Python Bio-Informatics Software, S/R Bio-Informatics Software

Registered

2011-09-11

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