Download Latest Version Bayes_est_core_genome_1.2.zip (4.6 MB)
Email in envelope

Get an email when there's a new version of Bayesian Estimated Core Genome

Home
Name Modified Size InfoDownloads / Week
README 2014-08-06 2.0 kB
0
Bayes_est_core_genome_1.2.zip 2014-08-06 4.6 MB
0
Bayes_est_core_genome_1.1.1.zip 2014-06-09 4.6 MB
0
Bayes_est_core_genome_1.1.zip 2014-06-06 1.1 MB
0
Bayes_est_core_genome_1.0.zip 2014-05-02 1.1 MB
0
Totals: 5 Items   11.4 MB 0 
############################################################
0. General remarks.
############################################################

This is the June 2014 release of the Bayesian Core Genome Model described in the following publication:

van Tonder AJ, Mistry S, Bray JE, Hill DMC, Cody AJ, Farmer CL, Klugman KP, von Gottberg A, Bentley SD,
Parkhill J, Jolley KA, Maiden MCJ and Brueggemann AB: Defining the estimated core genome of bacterial
populations using a Bayesian decision model.  PLoS Comp Biol (Under review)

#-----------------------------------------------------------
0.1. Disclaimers.

    This program is free software: you can redistribute it and/or modify
    it under the terms of the GNU General Public License as published by
    the Free Software Foundation, either version 3 of the License, or
    (at your option) any later version.

    This program is distributed in the hope that it will be useful,
    but WITHOUT ANY WARRANTY; without even the implied warranty of
    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    GNU General Public License for more details.

    You should have received a copy of the GNU General Public License
    along with this program.  If not, see <http://www.gnu.org/licenses/>.

#-----------------------------------------------------------
0.2. Credits, contacts etc.

Credits:

Andries J. van Tonder, University of Oxford
Shilan Mistry, University of Oxford
Angela Brueggemann, University of Oxford

Contacts:

Andries J. van Tonder <andries.vantonder@stcatz.ox.ac.uk>
Shilan Mistry <shilan.mistry@maths.ox.ac.uk>

############################################################
1. Changes.
############################################################

#-----------------------------------------------------------
1.1 Version 1.2

- Large alignment files should no longer cause segmentation faults.

1.2 Version 1.1.1

- Scripts edited and simplified to reduce the amount of editing required
- Test dataset added
- Manual updated to reflect changes to scripts
Source: README, updated 2014-08-06