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BatchPD is a primer design program developed to address the needs of clinical diagnostics laboratories to design primer oligos for PCR amplification against human gene exons, taking into account of SNPs where possible.
Research paper publication:
http://www.bioinformation.net/008/97320630008365.htm
BatchPD checks specificity via in-silico PCR, provide gene/exon specific relevant information summarised in an end spread-sheet; Primer design, PCR checks and other relevant information are queried from existing online tools with BatchPD acting as an intermediate to handle queries and results processing.
BatchPD interfaces with the following online bioinformatic resources:
* NCBI's GenBank
* USCS's Genome browser
* ExonPrimer
Optional extra SNP checks can be carried out via the web tool: SNPCheck.
BatchPD Uses the HtmlCleaner package:
http://htmlcleaner.sourceforge.net/
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